ViewGene
Locus Name:
GeneID:
Location:

GeneID:4025
TrivialName: PA14_72810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72810
PAO1 Ortholog Locus:PA5519
Sequence Length:567
Protein Length:188
Start: 6485952
Stop: 6485386
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08904.1|AE004964_7 (AE004964) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 188/188 (100%), Positives = 188/188 (100%)
Sequence:
ATGACGATTGAAAATTTGTGGCCGCTGCCGTCTTCGTTTGCGTCTATGGTGTCCCCCGCCCGTCCTGATGAG
AGAAAAAGCGCTATGCAACCCGGAAACAACCAACTGTCGATGACCGTGCTGATGACCCCGGACATGGCCAAT
TTCTCCGGCAATGTCCATGGCGGTACCCTCCTGAAGTATCTCGACGAAGTCGCCTATGCATGCGCCAGTCGC
TATGCCGGTCGCTACGTGGTGACCCTGTCGGTGGATCAGGTGATCTTCCGCGAGCCGGTGCATGTCGGCGAA
CTGGTGACCTTCCTCGCTTCGGTCAACTACACCGGGCGGACTTCCATGGAAATCGGCGTCAAGGTCATCACC
GAAAACATCCGCGAGCAGTCCGTGCGTCATACCAACAGCTGTTTCTTCACCATGGTCGCCCTGGATGACGAG
CGCAAGCCGGTGGCCGTCCGTCCGCTGGAGCTGGAAACCGCCGAGCAGAAGCGCCGCTTCGCCCAGGCCCAG
CAACGCCGCCAGCTGCGCGCGGAGCTGGAGGCCCGCTACCAGGCGATTCGCGAAGACGGTTGA
Translation:
MTIENLWPLPSSFASMVSPARPDERKSAMQPGNNQLSMTVLMTPDMANFSGNVHGGTLLKYLDEVAYACASR
YAGRYVVTLSVDQVIFREPVHVGELVTFLASVNYTGRTSMEIGVKVITENIREQSVRHTNSCFFTMVALDDE
RKPVAVRPLELETAEQKRRFAQAQQRRQLRAELEARYQAIREDG*
AnnotationID:4032GeneID:4025
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:09
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA thioester hydrolase
Cell Localization:()
Synonyms:PA5519
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1607
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58939.1| (AE016876) cytosolic long-chain acyl-CoA thioester hydrolase family
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 161

 Score =  277 bits (709), Expect = 2e-74
 Identities = 137/159 (86%), Positives = 147/159 (92%)

>emb|CAE34998.1| (BX640451) putative acyl-CoA thioester hydrolase [Bordetella
           bronchiseptica]
          Length = 171

 Score =  243 bits (620), Expect = 4e-64
 Identities = 117/154 (75%), Positives = 139/154 (90%)

>emb|CAD17354.1| (AL646077) PROBABLE ACYL-COA THIOESTER HYDROLASE-RELATED PROTEIN
           [Ralstonia solanacearum]
          Length = 164

 Score =  239 bits (610), Expect = 6e-63
 Identities = 117/157 (74%), Positives = 136/157 (86%)








 
Structural Features:
COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]
CD-Length = 157 residues,  98.7% aligned
Score =  188 bits (479), Expect = 3e-49
Identities = 70/155 (45%), Positives = 93/155 (60%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8052




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25195




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33308




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4025_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4025
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6264
                           PA5519_tr
                           translation of PA5519
                           188
                           99.99
                           99.99
                           0
                           955.0
     

     
     
172864
                           gb|AAG08904.1|AE004964_7
                           (AE004964) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           188
                           99.99
                           99.99
                           0
                           955.0
     

     
     
172865
                           gb|AAO58939.1|
                           (AE016876) cytosolic long-chain acyl-CoA thioester hydrolase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           189
                           72.48
                           77.77
                           29
                           709.0
     

     
     
172866
                           gb|AAN70921.1|AE016736_4
                           (AE016794) long-chain acyl-CoA thioester hydrolase family protein [Pseudomonas putida KT2440]
                           189
                           68.25
                           76.19
                           29
                           679.0
     

     
     
6265
                           PA2693_tr
                           translation of PA2693
                           194
                           64.94
                           73.71
                           34
                           652.0
     

     






      

          
GC ORFID: 47027How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5519Glimmer Score: 

          
Start: 5749641Stop: 5749075

          
Length: 567


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5519 translation of PA5519Homolog Bit Score 372.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2922 (ORF: BLASTX 276.0), t_PA5519 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGATTGAAAATTTGTGGCCGCTGCCGTCTTCGTTTGCGTCTATGGTGTCCCCCGCCCGTCCTGATGAG 
AGAAAAAGCGCTATGCAACCCGGAAACAACCAACTGTCGATGACCGTGCTGATGACCCCGGACATGGCCAAT 
TTCTCCGGCAATGTCCATGGCGGTACCCTCCTGAAGTATCTCGACGAAGTCGCCTATGCATGCGCCAGTCGC 
TATGCCGGTCGCTACGTGGTGACCCTGTCGGTGGATCAGGTGATCTTCCGCGAGCCGGTGCATGTCGGCGAA 
CTGGTGACCTTCCTCGCTTCGGTCAACTACACCGGGCGGACTTCCATGGAAATCGGCGTCAAGGTCATCACC 
GAAAACATCCGCGAGCAGTCCGTGCGTCATACCAACAGCTGTTTCTTCACCATGGTCGCCCTGGATGACGAG 
CGCAAGCCGGTGGCCGTCCGTCCGCTGGAGCTGGAAACCGCCGAGCAGAAGCGCCGCTTCGCCCAGGCCCAG 
CAACGCCGCCAGCTGCGCGCGGAGCTGGAGGCCCGCTACCAGGCGATTCGCGAAGACGGTTGA