ViewGene
Locus Name:
GeneID:
Location:

GeneID:4022
TrivialName: PA14_27210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27210
PAO1 Ortholog Locus:PA2851
Sequence Length:567
Protein Length:188
Start: 2364303
Stop: 2364869
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06239.1|AE004711_11 (AE004711) translation elongation factor P [Pseudomonas aeruginosa PAO1]
Identities = 188/188 (100%), Positives = 188/188 (100%)
Sequence:
ATGAAAACCGCTCAAGAGTTCCGCGCCGGCCAGGTTGCCAACATCAATGGCGCTCCCTGGGTCATCCAGAAG
GCCGAGTTCAACAAGTCCGGCCGTAACGCTGCCGTCGTCAAGATGAAGCTGAAGAACCTGCTGACCGGCGCC
GGTACCGAGACCGTGTTCAAGGCCGACGACAAGCTGGAGCCGATCATCCTCGATCGCAAGGAAGTGACCTAC
TCCTACTTCGCCGACCCGCTGTACGTCTTCATGGACAGCGAGTTCAACCAGTACGAGATCGAGAAAGACGAT
CTGGAAGGCGTGCTGACCTTCATCGAAGACGGCATGACCGACATCTGCGAAGCCGTGTTCTACAACGACAAG
GTGATCTCGGTAGAGCTGCCGACCACCATCGTTCGCCAGATCGCCTACACCGAGCCGGCCGTCCGCGGCGAC
ACCTCGGGCAAGGTGATGAAGACCGCGCGCCTGAACAACGGCGCCGAGCTGCAGGTTTCCGCGTTCTGCGAA
ATCGGCGACTCGATCGAGATCGATACCCGCACCGGCGAGTACAAGTCCCGCGTCAAGGCCTGA
Translation:
MKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTY
SYFADPLYVFMDSEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAYTEPAVRGD
TSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVKA*
AnnotationID:4029GeneID:4022
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 05:05:57
Gene Name:efp
Confidence Code:2
GeneProduct:translation elongation factor P
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01132,COG0231
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE32337.1| (BX640442) putative elongation factor P [Bordetella bronchiseptica]
          Length = 185

 Score =  244 bits (623), Expect = 2e-64
 Identities = 118/186 (63%), Positives = 145/186 (77%), Gaps = 2/186 (1%)

>emb|CAE37687.1| (BX640430) putative elongation factor P [Bordetella parapertussis]
          Length = 185

 Score =  244 bits (623), Expect = 2e-64
 Identities = 118/186 (63%), Positives = 145/186 (77%), Gaps = 2/186 (1%)

>emb|CAB84395.1| (AL162755) putative elongation factor P [Neisseria meningitidis
           Z2491]
          Length = 186

 Score =  244 bits (623), Expect = 2e-64
 Identities = 120/185 (64%), Positives = 141/185 (76%)






 
Structural Features:
pfam01132, EFP, Elongation factor P (EF-P).
CD-Length = 185 residues, 100.0% aligned
Score =  167 bits (425), Expect = 6e-43
Identities = 70/187 (37%), Positives = 107/187 (57%), Gaps = 3/187 (1%)

COG0231, Efp, Translation elongation factor P (EF-P)/
translation initiation factor 5A (eIF-5A) 
[Translation, ribosomal structure and biogenesis]
CD-Length = 131 residues,  98.5% aligned
Score =  137 bits (348), Expect = 6e-34
Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 3/131 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8046




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25189




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36208




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4022_cdd.html


    		




 
URL:

















    ReferenceID:36403




  
Author/Investigator(s):
        Aoki H, Adams SL, Chung DG, Yaguchi M, Chuang SE, Ganoza MC.





  
Title:
        Cloning, sequencing and overexpression of the gene for prokaryotic factor EF-P involved in peptide bond synthesis.




  
PubMed:
        1956781


MedLine:
        




    
Source:
Nucleic Acids Res. 1991 Nov 25;19(22):6215-20.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1956781









           
Homologs By Global Alignment 

           

       



     
Gene ID:4022
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6260
                           PA2851_tr
                           translation of PA2851
                           188
                           99.99
                           99.99
                           0
                           956.0
     

     
     
172783
                           gb|AAG06239.1|AE004711_11
                           (AE004711) translation elongation factor P [Pseudomonas aeruginosa PAO1]
                           188
                           99.99
                           99.99
                           0
                           956.0
     

     
     
172788
                           emb|CAB84395.1|
                           (AL162755) putative elongation factor P [Neisseria meningitidis Z2491]
                           188
                           63.82
                           75.00
                           2
                           623.0
     

     
     
172784
                           gb|AAQ59053.1|
                           (AE016914) elongation factor EF-P [Chromobacterium violaceum ATCC 12472]
                           189
                           63.49
                           78.83
                           3
                           643.0
     

     
     
172790
                           gb|AAF41343.1|
                           (AE002445) elongation factor P (EF-P) [Neisseria meningitidis MC58]
                           188
                           63.29
                           75.00
                           2
                           622.0
     

     






      

          
GC ORFID: 47024How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2851Glimmer Score: 

          
Start: 2589624Stop: 2589058

          
Length: 567


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2851 translation of PA2851Homolog Bit Score 372.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7750 (ORF: BLASTX 234.0), t_PA2851 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACCGCTCAAGAGTTCCGCGCCGGCCAGGTTGCCAACATCAATGGCGCTCCCTGGGTCATCCAGAAG 
GCCGAGTTCAACAAGTCCGGCCGTAACGCTGCCGTCGTCAAGATGAAGCTGAAGAACCTGCTGACCGGCGCC 
GGTACCGAGACCGTGTTCAAGGCCGACGACAAGCTGGAGCCGATCATCCTCGATCGCAAGGAAGTGACCTAC 
TCCTACTTCGCCGACCCGCTGTACGTCTTCATGGACAGCGAGTTCAACCAGTACGAGATCGAGAAAGACGAT 
CTGGAAGGCGTGCTGACCTTCATCGAAGACGGCATGACCGACATCTGCGAAGCCGTGTTCTACAACGACAAG 
GTGATCTCGGTAGAGCTGCCGACCACCATCGTTCGCCAGATCGCCTACACCGAGCCGGCCGTCCGCGGCGAC 
ACCTCGGGCAAGGTGATGAAGACCGCGCGCCTGAACAACGGCGCCGAGCTGCAGGTTTCCGCGTTCTGCGAA 
ATCGGCGACTCGATCGAGATCGATACCCGCACCGGCGAGTACAAGTCCCGCGTCAAGGCCTGA