ViewGene

Locus Name:
GeneID:
Location:

GeneID:4021
TrivialName: PA14_33590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33590
PAO1 Ortholog Locus:PA2404
Sequence Length:540
Protein Length:179
Start: 2955088
Stop: 2954549
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05792.1|AE004668_2 (AE004668) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 178/179 (99%), Positives = 178/179 (99%)
Sequence:
ATGAGCAAGGCCGCCGTTACCCAGCCCGTTTCGCCGCTGCGCCAGTTCTGGCTGCGCTGGCGTTTCCACCTG
AACGTTCTGCTGATCCTGATCCCGCTCGGTTTCATGCCGCGTTATTTTGCCGACATGGCGTTGTTCTCTGGC
AGCAGCGGACTGGGTGAACGCGAGATCGGCGAAGTCCAGGTAGGCCCCTGGAGTCTCAAGCTCGCCGAATGG
CGTATCGAACCGCCGCACGACGAAGGCCCCGCCGGCTTCATGAAGGACTTCAATGCCGCCCTCTGCCAGGCC
TGCATTCCCCAGGTCAAGGCGACCTACCTGCGCATCGGCAAGCCGCGCAGCCTGCGTGCCGCCGGGGTGATC
TTCTTCGGCAGCCCCTACCGCATGGGCACCAGCGTGCCGATCCCGCCGCGCACCCGGCCCGACGCCGAGCTG
TGGATCACCATGGAAGGCTGGGACGGCTCCATGCACCAGGCTTCCATTCCCCTGGCCGAGGCATCCCCCGCC
ACCGTGGCCTGGCTGAACAAACGAGGTAAGCAATGA
Translation:
MSKAAVTQPVSPLRQFWLRWRFHLNVLLILIPLGFMPRYFADMALFSGSSGLGEREIGEVQVGPWSLKLAEW
RIEPPHDEGPAGFMKDFNAALCQACIPQVKATYLRIGKPRSLRAAGVIFFGSPYRMGTSVPIPPRTRPDAEL
WITMEGWDGSMHQASIPLAEASPATVAWLNKRGKQ*
AnnotationID:4028GeneID:4021
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:12
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2404
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8044
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25187
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4021

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6259 PA2404_tr translation of PA2404 179 99.44 99.44 0 955.0
172778 gb|AAG05792.1|AE004668_2 (AE004668) hypothetical protein PA2404 [Pseudomonas aeruginosa PAO1] 179 99.44 99.44 0 955.0
172779 gb|AAO17444.1| (AF540993) PA2404 [Pseudomonas aeruginosa] 179 95.53 97.76 0 922.0
172780 gb|AAO17433.1| (AF540992) PA2404 [Pseudomonas aeruginosa] 179 95.53 97.76 0 922.0
172781 gb|AAN69392.1|AE016576_2 (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440] 180 71.11 82.22 4 695.0
GC ORFID: 47023How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2404Glimmer Score:
Start: 1998828Stop: 1999367
Length: 540
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2404 translation of PA2404Homolog Bit Score 372.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene481 (ORF: BLASTX 262.0), t_PA2404 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAAGGCCGCCGTTACCCAGCCCGTTTCGCCGCTGCGCCAGTTCTGGCTGCGCTGGCGTTTCCACCTG
AACGTTCTGCTGATCCTGATCCCGCTCGGTTTCATGCCGCGTTATTTTGCCGACATGGCGTTGTTCTCTGGC
AGCAGCGGACTGGGTGAACGCGAGATCGGCGAAGTCCAGGTAGGCCCCTGGAGTCTCAAGCTCGCCGAATGG
CGTATCGAACCGCCGCACGACGAAGGCCCCGCCGGCTTCATGAAGGACTTCAATGCCGCCCTCTGCCAGGCC
TGCATTCCCCAGGTCAAGGCGACCTACCTGCGCATCGGCAAGCCGCGCAGCCTGCGTGCCGCCGGGGTGATC
TTCTTCGGCAGCCCCTACCGCATGGGCACCAGCGTGCCGATCCCGCCGCGCACCCGGCCCGACGCCGAGCTG
TGGATCACCATGGAAGGCTGGGACGGCTCCATGCACCAGGCTTCCATTCCCCTGGCCGAGGCATCCCCCGCC
ACCGTGGCCTGGCTGAACAAACGAGGTAAGCAATGA