ViewGene

Locus Name:
GeneID:
Location:

GeneID:4020
TrivialName: PA14_47550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47550
PAO1 Ortholog Locus:PA1287
Sequence Length:555
Protein Length:184
Start: 4235979
Stop: 4235425
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04676.1|AE004558_5 (AE004558) probable glutathione peroxidase [Pseudomonas aeruginosa PAO1]
Identities = 183/184 (99%), Positives = 183/184 (99%)
Sequence:
ATGAAACCTCGCGTGCTGTTGTCCGCCCTGGCGCTCGCCGGGCTGCCGCTGAGCGGCTGGGCCGCCGATTGC
CCGGAACTGTTGCAGGGCCAGTTGACCAAGCTGCGTTCCAAGGAAAGCATCGATCTTTGCCAGCGTTACGCC
GGCAAGCCGCTGGTGGTGGTCAACACTGCCAGCCACTGTGGCTTCACCCCGCAGTTCAAGGGGCTCGAGGCG
CTCTACCAGCGCTACAAGGGGCAGGGCCTGGAAGTGCTCGGGGTACCCTCCGACGACTTCAAGCAGGAAGCC
GCGGATACCGCCGAGACCGCGAAGATCTGCTATGGCAACTACGGCGTGACCTTCGCCATGACCCAGCCGCAG
CACGTGCGCGGCGACGAGGCGATCCCGCTGTTCCGCCAGTTGGCCGAGCAGAGCGGCCAGGCGCCGCGCTGG
AATTTCTACAAGTACGTGGTGGATCGCCAGGGCAGGGTGGTCGCGCAGTTCTCCAGCAAGACCACCCCGGAC
GATCCGCAGCTCCAGGCTGCCATCGAGAAGGCCATCGCCAGCCAGCCCTGA
Translation:
MKPRVLLSALALAGLPLSGWAADCPELLQGQLTKLRSKESIDLCQRYAGKPLVVVNTASHCGFTPQFKGLEA
LYQRYKGQGLEVLGVPSDDFKQEAADTAETAKICYGNYGVTFAMTQPQHVRGDEAIPLFRQLAEQSGQAPRW
NFYKYVVDRQGRVVAQFSSKTTPDDPQLQAAIEKAIASQP*
AnnotationID:4027GeneID:4020
AnnotatorUID: diggins
Modification Date/Time: 2005-05-25 21:09:37
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione peroxidase
Cell Localization:(8) Periplasmic
Synonyms:PA1287
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0386,pfam00255
Secondary Functional Category(ies):putative enzyme
EC Number:EC 1.11.1.9
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55239.1| (AE016861) glutathione peroxidase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 183

 Score =  263 bits (671), Expect = 5e-70
 Identities = 134/184 (72%), Positives = 151/184 (82%), Gaps = 1/184 (0%)

>gb|AAN67307.1|AE016356_15 (AE016780) glutathione peroxidase [Pseudomonas putida KT2440]
          Length = 202

 Score =  248 bits (632), Expect = 2e-65
 Identities = 118/167 (70%), Positives = 138/167 (82%), Gaps = 1/167 (0%)

>gb|AAN56347.1|AE015772_7 (AE015772) glutathione peroxidase, putative [Shewanella oneidensis
           MR-1]
          Length = 177

 Score =  175 bits (443), Expect = 1e-43
 Identities = 86/178 (48%), Positives = 121/178 (67%), Gaps = 5/178 (2%)

Structural Features:
COG0386, BtuE, Glutathione peroxidase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 162 residues, 100.0% aligned
Score =  201 bits (512), Expect = 5e-53
Identities = 75/166 (45%), Positives = 98/166 (59%), Gaps = 10/166 (6%)

pfam00255, GSHPx, Glutathione peroxidase.
CD-Length = 109 residues,  88.1% aligned
Score = 93.7 bits (233), Expect = 1e-20
Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Genomic Context:
Comment:
ReferenceID:8042
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25185
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37507
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4020_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4020

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6256 PA1287_tr translation of PA1287 184 99.45 99.45 0 954.0
172717 gb|AAG04676.1|AE004558_5 (AE004558) probable glutathione peroxidase [Pseudomonas aeruginosa PAO1] 184 99.45 99.45 0 954.0
172718 gb|AAO55239.1| (AE016861) glutathione peroxidase family protein [Pseudomonas syringae pv. tomato str. DC3000] 184 72.82 82.06 1 673.0
172719 gb|AAN67307.1|AE016356_15 (AE016780) glutathione peroxidase [Pseudomonas putida KT2440] 204 60.29 72.05 22 631.0
172720 gb|AAB53646.1| (U88907) selenium-dependent glutathione peroxidase-like protein [Pseudomonas wisconsinensis] 224 57.58 65.62 42 612.0
GC ORFID: 47022How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1287Glimmer Score:
Start: 717930Stop: 718484
Length: 555
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1287 translation of PA1287Homolog Bit Score 372.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1370 (ORF: BLASTX 266.0), t_PA0838 (ORF: BLASTX 125.0), psyr_15may02_Scaffold3_revised_gene4341 (ORF: BLASTX 124.0), t_PA2826 (ORF: BLASTX 115.0), psyr_15may02_Scaffold8_revised_gene7762 (ORF: BLASTX 115.0), t_PA1287 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACCTCGCGTGCTGTTGTCCGCCCTGGCGCTCGCCGGGCTGCCGCTGAGCGGCTGGGCCGCCGATTGC
CCGGAACTGTTGCAGGGCCAGTTGACCAAGCTGCGTTCCAAGGAAAGCATCGATCTTTGCCAGCGTTACGCC
GGCAAGCCGCTGGTGGTGGTCAACACTGCCAGCCACTGTGGCTTCACCCCGCAGTTCAAGGGGCTCGAGGCG
CTCTACCAGCGCTACAAGGGGCAGGGCCTGGAAGTGCTCGGGGTACCCTCCGACGACTTCAAGCAGGAAGCC
GCGGATACCGCCGAGACCGCGAAGATCTGCTATGGCAACTACGGCGTGACCTTCGCCATGACCCAGCCGCAG
CACGTGCGCGGCGACGAGGCGATCCCGCTGTTCCGCCAGTTGGCCGAGCAGAGCGGCCAGGCGCCGCGCTGG
AATTTCTACAAGTACGTGGTGGATCGCCAGGGCAGGGTGGTCGCGCAGTTCTCCAGCAAGACCACCCCGGAC
GATCCGCAGCTCCAGGCTGCCATCGAGAAGGCCATCGCCAGCCAGCCCTGA