ViewGene

Locus Name:
GeneID:
Location:

GeneID:402
TrivialName: PA14_63990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63990
PAO1 Ortholog Locus:PA4839
Sequence Length:1911
Protein Length:636
Start: 5703942
Stop: 5702032
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08224.1|AE004897_2 (AE004897) biosynthetic arginine decarboxylase [Pseudomonas aeruginosa PAO1]
Identities = 636/636 (100%), Positives = 636/636 (100%)
Sequence:
ATGGCCGCTCGACGGACTCGCAAAGACGATGGCAGCAACTGGACCGTGGCCGACAGCCGCGGCGTATACGGC
ATCCGCCACTGGGGTGCGGGTTATTTCGCCATCAACGATGGCGGCAATGTCGAAGTGCGTCCGCAGGGCGCC
GACTCGACGCCCATCGATCTCTACGAGCTGGTCGGCCAGTTGCGCGAGGCGGGCCTGAGCCTGCCGCTGCTG
GTGCGCTTCCCGGATATCCTGCAGGACCGCGTGCGCAAGCTCACCGGCGCCTTCGACGCGAACATCGAGCGC
CTCGAATACCAGAGCCGCTATACCGCGCTGTATCCGATCAAGGTCAACCAGCAGGAAGCGGTGGTGGAGAAC
ATCATCGCCACCGAGAACGTCTCCATCGGCCTGGAGGCAGGCTCCAAGCCGGAACTCATGGCGGTGCTGGCG
CTGGCCCCGAAGGGCGGCACCATCGTCTGCAACGGCTACAAGGACCGCGAGTTCATCAAGCTGGCGCTGATG
GGGCAGAAGCTCGGGCACAACGTGTTCATCGTGATCGAGAAGGAATCCGAGGTGCAGCTGGTGATCGAGGAG
GCCGCCAACGTCGGCGTGCAGCCCCAGGTCGGCCTGCGCGTGCGGCTGTCCTCGCTGGCTTCGTCGAAGTGG
GCAGACACCGGTGGCGAGAAGGCCAAGTTCGGCCTTTCCGCCGCCCAGCTGCTGTCGGTGGTCGAGCGCTTC
CGCCAGGCCGGTCTCGACCAGGGCGTGCGCCTGCTGCATTTCCACATGGGCTCGCAGATCGCCAACCTGGCC
GACTACCAGCACGGCTTCAAGGAAGCCATCCGCTACTACGGCGAGCTGCGCGCGCTCGGCCTGCCGGTGGAT
CACATCGACGTTGGCGGTGGCCTCGGCGTCGACTACGACGGCACCCATTCGCGCAACGCCAGCTCGATCAAC
TACGACATCGATGACTATGCCGGCGTGGTGGTCGGCATGCTCAAGGAGTTCTGCGACGCCCAGGGCCTGCCG
CATCCGCACATCTTCTCGGAGAGCGGCCGGGCGCTGACCGCGCACCATGCGGTGCTGATCACCCAGGTCACC
GACGTCGAGCGGCACAACGACGACGTGCCGAAGATCGTCGATCTCGACGAGCAGCCGGAGATCGTCCGCTGG
CTGGCCGAACTGCTCGGCCCGACCGATGCCGAGATGGTCACCGAGACCTACTGGCGCGCCACCCACTACATC
GGCGACGCCGCCGCGCAGTATGCCGACGGCAAGATCAGCCTGGCGCAGAAAGCCCTCGCCGAGCAGTGCTAC
TTCGCTATCTGCCGGCGCCTGCACAACCAGCTCAAGGCCCGCCAGCGCTCCCACCGGCAGGTCCTCGACGAA
CTCAACGACAAGCTCGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCGGATACCTGGGCC
ATCGGCCAGGTGCTGCCGATCCTGCCGCTGCACCGACTGGGCGAGGAGCCGGATCGGCGCGCGGTACTGCAG
GACCTGACCTGCGACTCCGACGGCAAGATCACCCAGTACGTCGACGAGCAGAGCATCGAGACCAGCCTGCCG
GTGCACGAGGTGAAGGAGGGCGAGGACTACCTGATCGGGGTGTTCCTGGTCGGCGCCTACCAGGAGATCCTC
GGCGACATGCACAACCTGTTCGGCGACACCGACTCGGTGAACGTCTACCAGCGCGCAGACGGCGGCATCTAT
CACGCCGGCATCGAGACCCACGACACCATCGAGGACATGCTGCGCTACGTGCACCTGTCGCCGGAGGAACTG
ATGACCCTCTACCGCGACAAGGTCGCCGGGGCCAAGCTCACCGCCCGCGAGCGCAACCAGTACCTGGATGCG
CTGCGCCTGGGGCTGACCCGCTCGGCGTACCTGTCCTGA
Translation:
MAARRTRKDDGSNWTVADSRGVYGIRHWGAGYFAINDGGNVEVRPQGADSTPIDLYELVGQLREAGLSLPLL
VRFPDILQDRVRKLTGAFDANIERLEYQSRYTALYPIKVNQQEAVVENIIATENVSIGLEAGSKPELMAVLA
LAPKGGTIVCNGYKDREFIKLALMGQKLGHNVFIVIEKESEVQLVIEEAANVGVQPQVGLRVRLSSLASSKW
ADTGGEKAKFGLSAAQLLSVVERFRQAGLDQGVRLLHFHMGSQIANLADYQHGFKEAIRYYGELRALGLPVD
HIDVGGGLGVDYDGTHSRNASSINYDIDDYAGVVVGMLKEFCDAQGLPHPHIFSESGRALTAHHAVLITQVT
DVERHNDDVPKIVDLDEQPEIVRWLAELLGPTDAEMVTETYWRATHYIGDAAAQYADGKISLAQKALAEQCY
FAICRRLHNQLKARQRSHRQVLDELNDKLADKYICNFSVFQSLPDTWAIGQVLPILPLHRLGEEPDRRAVLQ
DLTCDSDGKITQYVDEQSIETSLPVHEVKEGEDYLIGVFLVGAYQEILGDMHNLFGDTDSVNVYQRADGGIY
HAGIETHDTIEDMLRYVHLSPEELMTLYRDKVAGAKLTARERNQYLDALRLGLTRSAYLS*
AnnotationID:411GeneID:402
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 06:06:00
Gene Name:speA
Confidence Code:2
GeneProduct:biosynthetic arginine decarboxylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1166
Secondary Functional Category(ies):
EC Number:4.1.1.19
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66194.1|AE016247_4 (AE016776) biosynthetic arginine decarboxylase [Pseudomonas putida
           KT2440]
          Length = 637

 Score = 1149 bits (2973), Expect = 0.0
 Identities = 563/636 (88%), Positives = 599/636 (94%)

>gb|AAO58271.1| (AE016873) biosynthetic arginine decarboxylase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 637

 Score = 1136 bits (2938), Expect = 0.0
 Identities = 556/636 (87%), Positives = 594/636 (93%)

Structural Features:
COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) 
[Amino acid transport and metabolism]
CD-Length = 652 residues,  98.0% aligned
Score =  930 bits (2405), Expect = 0.0
Identities = 345/639 (53%), Positives = 433/639 (67%), Gaps = 3/639 (0%)
Genomic Context:
Comment:
ReferenceID:807
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17949
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35208
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:402_cdd.html
URL:
ReferenceID:35983
Author/Investigator(s): Moore RC, Boyle SM.
Title: Nucleotide sequence and analysis of the speA gene encoding biosynthetic arginine decarboxylase in Escherichia coli.
PubMed: 2198270
MedLine:
Source:
J Bacteriol. 1990 Aug;172(8):4631-40.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2198270
Homologs By Global Alignment
Gene ID:402

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
686 PA4839_tr translation of PA4839 636 99.99 99.99 0 3289.0
31218 gb|AAG08224.1|AE004897_2 (AE004897) biosynthetic arginine decarboxylase [Pseudomonas aeruginosa PAO1] 636 99.99 99.99 0 3289.0
31219 gb|AAN66194.1|AE016247_4 (AE016776) biosynthetic arginine decarboxylase [Pseudomonas putida KT2440] 637 88.38 94.03 1 2973.0
31220 gb|AAO58271.1| (AE016873) biosynthetic arginine decarboxylase [Pseudomonas syringae pv. tomato str. DC3000] 637 87.28 93.24 1 2938.0
31221 gb|AAQ60544.1| (AE016920) arginine decarboxylase [Chromobacterium violaceum ATCC 12472] 637 67.03 77.86 12 2202.0
GC ORFID: 43404How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4839Glimmer Score:
Start: 4967622Stop: 4965712
Length: 1911
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4839 translation of PA4839Homolog Bit Score 1271.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5752 (ORF: BLASTX 1134.0), t_PA4839 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCGCTCGACGGACTCGCAAAGACGATGGCAGCAACTGGACCGTGGCCGACAGCCGCGGCGTATACGGC
ATCCGCCACTGGGGTGCGGGTTATTTCGCCATCAACGATGGCGGCAATGTCGAAGTGCGTCCGCAGGGCGCC
GACTCGACGCCCATCGATCTCTACGAGCTGGTCGGCCAGTTGCGCGAGGCGGGCCTGAGCCTGCCGCTGCTG
GTGCGCTTCCCGGATATCCTGCAGGACCGCGTGCGCAAGCTCACCGGCGCCTTCGACGCGAACATCGAGCGC
CTCGAATACCAGAGCCGCTATACCGCGCTGTATCCGATCAAGGTCAACCAGCAGGAAGCGGTGGTGGAGAAC
ATCATCGCCACCGAGAACGTCTCCATCGGCCTGGAGGCAGGCTCCAAGCCGGAACTCATGGCGGTGCTGGCG
CTGGCCCCGAAGGGCGGCACCATCGTCTGCAACGGCTACAAGGACCGCGAGTTCATCAAGCTGGCGCTGATG
GGGCAGAAGCTCGGGCACAACGTGTTCATCGTGATCGAGAAGGAATCCGAGGTGCAGCTGGTGATCGAGGAG
GCCGCCAACGTCGGCGTGCAGCCCCAGGTCGGCCTGCGCGTGCGGCTGTCCTCGCTGGCTTCGTCGAAGTGG
GCAGACACCGGTGGCGAGAAGGCCAAGTTCGGCCTTTCCGCCGCCCAGCTGCTGTCGGTGGTCGAGCGCTTC
CGCCAGGCCGGTCTCGACCAGGGCGTGCGCCTGCTGCATTTCCACATGGGCTCGCAGATCGCCAACCTGGCC
GACTACCAGCACGGCTTCAAGGAAGCCATCCGCTACTACGGCGAGCTGCGCGCGCTCGGCCTGCCGGTGGAT
CACATCGACGTTGGCGGTGGCCTCGGCGTCGACTACGACGGCACCCATTCGCGCAACGCCAGCTCGATCAAC
TACGACATCGATGACTATGCCGGCGTGGTGGTCGGCATGCTCAAGGAGTTCTGCGACGCCCAGGGCCTGCCG
CATCCGCACATCTTCTCGGAGAGCGGCCGGGCGCTGACCGCGCACCATGCGGTGCTGATCACCCAGGTCACC
GACGTCGAGCGGCACAACGACGACGTGCCGAAGATCGTCGATCTCGACGAGCAGCCGGAGATCGTCCGCTGG
CTGGCCGAACTGCTCGGCCCGACCGATGCCGAGATGGTCACCGAGACCTACTGGCGCGCCACCCACTACATC
GGCGACGCCGCCGCGCAGTATGCCGACGGCAAGATCAGCCTGGCGCAGAAAGCCCTCGCCGAGCAGTGCTAC
TTCGCTATCTGCCGGCGCCTGCACAACCAGCTCAAGGCCCGCCAGCGCTCCCACCGGCAGGTCCTCGACGAA
CTCAACGACAAGCTCGCCGACAAGTACATCTGCAACTTCTCGGTGTTCCAGAGCCTGCCGGATACCTGGGCC
ATCGGCCAGGTGCTGCCGATCCTGCCGCTGCACCGACTGGGCGAGGAGCCGGATCGGCGCGCGGTACTGCAG
GACCTGACCTGCGACTCCGACGGCAAGATCACCCAGTACGTCGACGAGCAGAGCATCGAGACCAGCCTGCCG
GTGCACGAGGTGAAGGAGGGCGAGGACTACCTGATCGGGGTGTTCCTGGTCGGCGCCTACCAGGAGATCCTC
GGCGACATGCACAACCTGTTCGGCGACACCGACTCGGTGAACGTCTACCAGCGCGCAGACGGCGGCATCTAT
CACGCCGGCATCGAGACCCACGACACCATCGAGGACATGCTGCGCTACGTGCACCTGTCGCCGGAGGAACTG
ATGACCCTCTACCGCGACAAGGTCGCCGGGGCCAAGCTCACCGCCCGCGAGCGCAACCAGTACCTGGATGCG
CTGCGCCTGGGGCTGACCCGCTCGGCGTACCTGTCCTGA