ViewGene

Locus Name:
GeneID:
Location:

GeneID:4019
TrivialName: PA14_52380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52380
PAO1 Ortholog Locus:PA0918
Sequence Length:549
Protein Length:182
Start: 4649035
Stop: 4649583
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04307.1|AE004526_2 (AE004526) cytochrome b561 [Pseudomonas aeruginosa PAO1]
Identities = 180/182 (98%), Positives = 181/182 (99%)
Sequence:
ATGAGCTGGAAAAACACCGAGTCCCGTTATGGGAGCCTGACCATTGCCCTGCACTGGCTGACCCTGCTGCTG
ATCGCCGGGGTCTACGCCTGTATCGAACTGAAGGGCAATTTCCCCAAGGGCAGCGAAACCCGCGAACTGCTC
AAGCAATGGCACTTCATGCTTGGCCTGAGCGTTTTCCTGCTGGTCTGGTTGCGCCTGCTGGTGCGCCTGGCC
AGCCCTACCCCGCGCATAGAGCCCGCCATCCCCGCCTGGCAGGCGACGCTGGCCAGGCTGATGCACTACGCC
CTCTACCTGATGATGATCGGCCTGCCCTTCGCCGGCTGGCTGATCCTCAGCGCCGCCGGCAAGCCGATACCG
TTCTTCGGCCTGGAGCTACCGCCGCTGGTAGACAAGAACCCCGACCTCGCCGGGCAAATCAAGGAATGGCAC
GAAACCATCGGCAACGCCGGTTATTTCCTGATCGGCTTGCACGCCGCCGCGGCACTCTTCCATCACTTCGTC
AGCCACGACAACACCCTGGTACGGATGCTGCCGCAACGGCGCTGA
Translation:
MSWKNTESRYGSLTIALHWLTLLLIAGVYACIELKGNFPKGSETRELLKQWHFMLGLSVFLLVWLRLLVRLA
SPTPRIEPAIPAWQATLARLMHYALYLMMIGLPFAGWLILSAAGKPIPFFGLELPPLVDKNPDLAGQIKEWH
ETIGNAGYFLIGLHAAAALFHHFVSHDNTLVRMLPQRR*
AnnotationID:4026GeneID:4019
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 16:04:04
Gene Name:
Confidence Code:2
GeneProduct:cytochrome b561
Cell Localization:()
Synonyms:PA0918
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:cybb
Functional Category Confidence Code:5
COGs:COG3038, pfam01292
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3038, CybB, Cytochrome B561. Score: 185, 3e-48
pfam01292, Ni_hydr_CYTB, Cytochrome b561 family. Score: 157, 8e-40
Genomic Context:
Comment:
ReferenceID:8040
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25183
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4019

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6255 PA0918_tr translation of PA0918 182 98.90 99.45 0 956.0
172693 gb|AAG04307.1|AE004526_2 (AE004526) cytochrome b561 [Pseudomonas aeruginosa PAO1] 182 98.90 99.45 0 956.0
172694 gb|AAN67624.1|AE016392_5 (AE016781) cytochrome b561 [Pseudomonas putida KT2440] 182 65.38 74.72 1 614.0
172710 gb|AAQ60719.1| (AE016920) cytochrome b561 [Chromobacterium violaceum ATCC 12472] 183 43.16 54.09 3 353.0
172698 dbj|BAB36135.1| (AP002559) putative cytochrome [Escherichia coli O157:H7] 186 43.01 61.29 4 404.0
GC ORFID: 47021How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0918Glimmer Score:
Start: 304872Stop: 304324
Length: 549
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0918 translation of PA0918Homolog Bit Score 372.0
Other Homologs: t_PA0918 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCTGGAAAAACACCGAGTCCCGTTATGGGAGCCTGACCATTGCCCTGCACTGGCTGACCCTGCTGCTG
ATCGCCGGGGTCTACGCCTGTATCGAACTGAAGGGCAATTTCCCCAAGGGCAGCGAAACCCGCGAACTGCTC
AAGCAATGGCACTTCATGCTTGGCCTGAGCGTTTTCCTGCTGGTCTGGTTGCGCCTGCTGGTGCGCCTGGCC
AGCCCTACCCCGCGCATAGAGCCCGCCATCCCCGCCTGGCAGGCGACGCTGGCCAGGCTGATGCACTACGCC
CTCTACCTGATGATGATCGGCCTGCCCTTCGCCGGCTGGCTGATCCTCAGCGCCGCCGGCAAGCCGATACCG
TTCTTCGGCCTGGAGCTACCGCCGCTGGTAGACAAGAACCCCGACCTCGCCGGGCAAATCAAGGAATGGCAC
GAAACCATCGGCAACGCCGGTTATTTCCTGATCGGCTTGCACGCCGCCGCGGCACTCTTCCATCACTTCGTC
AGCCACGACAACACCCTGGTACGGATGCTGCCGCAACGGCGCTGA