ViewGene
Locus Name:
GeneID:
Location:

GeneID:4018
TrivialName: PA14_69330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69330
PAO1 Ortholog Locus:PA5251
Sequence Length:579
Protein Length:192
Start: 6184818
Stop: 6184240
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08636.1|AE004937_8 (AE004937) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 187/192 (97%), Positives = 192/192 (100%)
Sequence:
ATGGATAACCTGCAGATGTTGACGCAGACCTGGAGCGGGCCGCTGGTGGTGGCGCTGCAGATCCTGCTCATC
CTGCTGGTCGCCTGGCTGCTCCAGCGCCTGGTCCGACGCACGGTGACCCGTATCGGCGAGCGTTATCCGGTG
CCGCCGGAGCTGCTCCTGCCGCTGCGTGGCGGCCTGCGCTGGCTGATCATGGTCAGCGCACTGATCATGGTG
CTGGAGCGCCTGGGCGTGTCCGCCGAAGTGCTGTGGACCGCGCTGACCGGTTTCGCCGCGGTGGCGGCGGTA
GCCTTCTTCGCCATCTGGAGCGTGCTCTCCAACCTGTTCTGTGCGTTGCTGATCTTCACCGTCGGACCGTTC
CGCATCGGCGACCGCGTGGAGCTGATCGATAGCGCCGACAAACCGGGCGTCACCGGACGCGTGGTTGCCATC
AATCTCTTGTATACGACACTGGAAGAAACCCTCGAGGATGGCTCGCCGGGCCCGCTGCTGCAGGTTCCCAAC
AGCCTGTTCTTCCAGAAAGCCGTGCGTCGCTGGCGTGGGCCAGGTTTTTCAACTCCAACAAAAAACGGGAAA
TAA
Translation:
MDNLQMLTQTWSGPLVVALQILLILLVAWLLQRLVRRTVTRIGERYPVPPELLLPLRGGLRWLIMVSALIMV
LERLGVSAEVLWTALTGFAAVAAVAFFAIWSVLSNLFCALLIFTVGPFRIGDRVELIDSADKPGVTGRVVAI
NLLYTTLEETLEDGSPGPLLQVPNSLFFQKAVRRWRGPGFSTPTKNGK*
AnnotationID:4025GeneID:4018
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5251
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8038




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25181




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34808




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4018_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4018
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6254
                           PA5251_tr
                           translation of PA5251
                           192
                           97.39
                           99.99
                           0
                           958.0
     

     
     
172688
                           gb|AAG08636.1|AE004937_8
                           (AE004937) hypothetical protein PA5251 [Pseudomonas aeruginosa PAO1]
                           192
                           97.39
                           99.99
                           0
                           958.0
     

     
     
172690
                           gb|AAN65830.1|AE016211_8
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           197
                           64.46
                           77.15
                           7
                           624.0
     

     
     
172689
                           gb|AAO53693.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           199
                           63.31
                           76.38
                           9
                           622.0
     

     
     
172691
                           gb|AAM40603.1|
                           (AE012229) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           197
                           50.76
                           66.49
                           14
                           470.0
     

     






      

          
GC ORFID: 47020How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5251Glimmer Score: 

          
Start: 5448505Stop: 5447927

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5251 translation of PA5251Homolog Bit Score 373.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4075 (ORF: BLASTX 247.0), t_PA5251 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATAACCTGCAGATGTTGACGCAGACCTGGAGCGGGCCGCTGGTGGTGGCGCTGCAGATCCTGCTCATC 
CTGCTGGTCGCCTGGCTGCTCCAGCGCCTGGTCCGACGCACGGTGACCCGTATCGGCGAGCGTTATCCGGTG 
CCGCCGGAGCTGCTCCTGCCGCTGCGTGGCGGCCTGCGCTGGCTGATCATGGTCAGCGCACTGATCATGGTG 
CTGGAGCGCCTGGGCGTGTCCGCCGAAGTGCTGTGGACCGCGCTGACCGGTTTCGCCGCGGTGGCGGCGGTA 
GCCTTCTTCGCCATCTGGAGCGTGCTCTCCAACCTGTTCTGTGCGTTGCTGATCTTCACCGTCGGACCGTTC 
CGCATCGGCGACCGCGTGGAGCTGATCGATAGCGCCGACAAACCGGGCGTCACCGGACGCGTGGTTGCCATC 
AATCTCTTGTATACGACACTGGAAGAAACCCTCGAGGATGGCTCGCCGGGCCCGCTGCTGCAGGTTCCCAAC 
AGCCTGTTCTTCCAGAAAGCCGTGCGTCGCTGGCGTGGGCCAGGTTTTTCAACTCCAACAAAAAACGGGAAA 
TAA