ViewGene
Locus Name:
GeneID:
Location:

GeneID:4017
TrivialName: PA14_33940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33940
PAO1 Ortholog Locus:PA2374
Sequence Length:537
Protein Length:178
Start: 3017573
Stop: 3017037
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05762.1|AE004663_8 (AE004663) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 174/178 (97%), Positives = 176/178 (98%)
Sequence:
ATGGCGGCATCCGGCAAGCTCGACCTGGTTCGTGGCGACAGCCATCTCGCTGGTAACCTGCTCGACGGCAGC
CTGGAAGGTCCGTTGCGCATCGACGAGCACGACAGGCCGCAGGCCAGCCTCGGCTACCGGCAGGGCCAGTTG
CACGGCGCCAGCACCCTGTTCCATCCCAACGGCAAGGTCTCCGCGCAACTCGCCTTCGTCGACGGCAAGCTG
CACGGGCCGGCCAGTTTCCATGCCGCGGAAGGCTGGTTGCAGCGCAAGGCGCACTACCGCAACGGGCTGCTC
CACGGCGAAGCGCTCAACTATTTCGCCAACGGCCAGATGGCCGAGCGCGAGCATTACCGCGACGGCGTGCGC
GACGGGGTCTACcAGCGCTTCCATGGCAATGGCCAaCTGGCCTTCGACGGACGCTACCTGAACGgCCAGCTA
CTGGACGGCGCTCAGCCGTTCGCCGATGACGGCCGGCCGCTGGACAGCGAGGGCAGGCCCATGGCGCGCTGG
CGCTGGTGGTGGATCAGGCTGGCGGAGCCCTAG
Translation:
MAASGKLDLVRGDSHLAGNLLDGSLEGPLRIDEHDRPQASLGYRQGQLHGASTLFHPNGKVSAQLAFVDGKL
HGPASFHAAEGWLQRKAHYRNGLLHGEALNYFANGQMAEREHYRDGVRDGVYQRFHGNGQLAFDGRYLNGQL
LDGAQPFADDGRPLDSEGRPMARWRWWWIRLAEP*
AnnotationID:4024GeneID:4017
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 17:05:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2374
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8036




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25179




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32917




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4017_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4017
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6253
                           PA2374_tr
                           translation of PA2374
                           178
                           97.75
                           98.87
                           0
                           957.0
     

     
     
172687
                           gb|AAG05762.1|AE004663_8
                           (AE004663) hypothetical protein PA2374 [Pseudomonas aeruginosa PAO1]
                           178
                           97.75
                           98.87
                           0
                           957.0
     

     






      

          
GC ORFID: 47019How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2374Glimmer Score: 

          
Start: 1936343Stop: 1936879

          
Length: 537


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2374 translation of PA2374Homolog Bit Score 373.0

          
Other Homologs:  t_PA2374 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGGCATCCGGCAAGCTCGACCTGGTTCGTGGCGACAGCCATCTCGCTGGTAACCTGCTCGACGGCAGC 
CTGGAAGGTCCGTTGCGCATCGACGAGCACGACAGGCCGCAGGCCAGCCTCGGCTACCGGCAGGGCCAGTTG 
CACGGCGCCAGCACCCTGTTCCATCCCAACGGCAAGGTCTCCGCGCAACTCGCCTTCGTCGACGGCAAGCTG 
CACGGGCCGGCCAGTTTCCATGCCGCGGAAGGCTGGTTGCAGCGCAAGGCGCACTACCGCAACGGGCTGCTC 
CACGGCGAAGCGCTCAACTATTTCGCCAACGGCCAGATGGCCGAGCGCGAGCATTACCGCGACGGCGTGCGC 
GACGGGGTCTACcAGCGCTTCCATGGCAATGGCCAaCTGGCCTTCGACGGACGCTACCTGAACGgCCAGCTA 
CTGGACGGCGCTCAGCCGTTCGCCGATGACGGCCGGCCGCTGGACAGCGAGGGCAGGCCCATGGCGCGCTGG 
CGCTGGTGGTGGATCAGGCTGGCGGAGCCCTAG