ViewGene
Locus Name:
GeneID:
Location:

GeneID:4016
TrivialName: PA14_34730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34730
PAO1 Ortholog Locus:PA2312
Sequence Length:582
Protein Length:193
Start: 3085870
Stop: 3085289
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05700.1|AE004657_7 (AE004657) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 193/193 (100%), Positives = 193/193 (100%)
Sequence:
GTGCATACCGAACCCGATGATCTGATTGGCCAGCGCGTCGCCCACAACCTGCTGCGCCTGCGCGGCAAGCGC
AATCTCTCGCTGGACGCCCTGGCGCGGATTTCCGGTGTCAGCCGGGCGATGCTGGCGCAGATCGAGTCCGGG
CGCAGCGTGCCGTCGATCAAGGTGCTGTGCAAGATCGCCCAGGGCCTCAAGGTGTCGGTGGCAGCCTTCCTC
GACGATCGCGCCTTCGCCGGCGTCGCCGTGCTGCCGGCGCAACAGAGCAAGCGCCTGGTCAGCGCCGACGGC
GCCTTCACCAGCCGCGCGCTGTTCCCCTTCGATGTGGCGCGTCAGGTGGAGTTCTACGAACTGCGCCTGCGC
GGCCTCGGCCAGGAAGACGCCGAGGCCCATGCCCCCGGCACCCAGGAGAACCTGGTGGTGGCGCAAGGGGTA
CTGGAAGTGCGGGTCAACGAAGAGCGTTTCCTGCTCGCCACCGGCGACTCGATCCTGTTCTACGCCGACCAG
CCGCACAGCTACCGCAACCCCGCCGATAGCGAAGCGCTGGCGTACCTGGTGATGACCTACCCGGAGCGCCTG
GACTGA
Translation:
MHTEPDDLIGQRVAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCKIAQGLKVSVAAFL
DDRAFAGVAVLPAQQSKRLVSADGAFTSRALFPFDVARQVEFYELRLRGLGQEDAEAHAPGTQENLVVAQGV
LEVRVNEERFLLATGDSILFYADQPHSYRNPADSEALAYLVMTYPERLD*
AnnotationID:4023GeneID:4016
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:47
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, XRE family
Cell Localization:()
Synonyms:PA2312
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00093,smart00530
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56575.1| (AE016867) transcriptional regulator, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 212

 Score =  297 bits (761), Expect = 2e-80
 Identities = 151/188 (80%), Positives = 167/188 (88%)

>gb|AAN50093.1|AE011454_2 (AE011454) Predicted transcriptional regulator [Leptospira
           interrogans serovar lai str. 56601]
          Length = 203

 Score =  160 bits (406), Expect = 3e-39
 Identities = 89/185 (48%), Positives = 117/185 (63%)






 
Structural Features:
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
CD-Length = 58 residues, 100.0% aligned
Score = 55.9 bits (135), Expect = 3e-09
Identities = 21/58 (36%), Positives = 36/58 (62%)

smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins 
CD-Length = 56 residues, 100.0% aligned
Score = 53.2 bits (128), Expect = 2e-08
Identities = 22/56 (39%), Positives = 36/56 (64%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14990




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25177




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32477




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4016_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4016
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6252
                           PA2312_tr
                           translation of PA2312
                           193
                           99.99
                           99.99
                           0
                           957.0
     

     
     
172683
                           gb|AAG05700.1|AE004657_7
                           (AE004657) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           193
                           99.48
                           99.99
                           0
                           954.0
     

     
     
172684
                           gb|AAO56575.1|
                           (AE016867) transcriptional regulator, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           213
                           70.89
                           79.81
                           21
                           757.0
     

     
     
172685
                           emb|CAE28048.1|
                           (BX572601) possible transcriptional regulator, XRE family, CUPIN domain [Rhodopseudomonas palustris CGA009]
                           209
                           48.32
                           59.80
                           18
                           438.0
     

     
     
172686
                           gb|AAN50093.1|AE011454_2
                           (AE011454) Predicted transcriptional regulator [Leptospira interrogans serovar lai str. 56601]
                           209
                           43.06
                           56.45
                           22
                           399.0
     

     






      

          
GC ORFID: 47018How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2312Glimmer Score: 

          
Start: 1868046Stop: 1868627

          
Length: 582


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2312 translation of PA2312Homolog Bit Score 373.0

          
Other Homologs:  t_PA2312 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCATACCGAACCCGATGATCTGATTGGCCAGCGCGTCGCCCACAACCTGCTGCGCCTGCGCGGCAAGCGC 
AATCTCTCGCTGGACGCCCTGGCGCGGATTTCCGGTGTCAGCCGGGCGATGCTGGCGCAGATCGAGTCCGGG 
CGCAGCGTGCCGTCGATCAAGGTGCTGTGCAAGATCGCCCAGGGCCTCAAGGTGTCGGTGGCAGCCTTCCTC 
GACGATCGCGCCTTCGCCGGCGTCGCCGTGCTGCCGGCGCAACAGAGCAAGCGCCTGGTCAGCGCCGACGGC 
GCCTTCACCAGCCGCGCGCTGTTCCCCTTCGATGTGGCGCGTCAGGTGGAGTTCTACGAACTGCGCCTGCGC 
GGCCTCGGCCAGGAAGACGCCGAGGCCCATGCCCCCGGCACCCAGGAGAACCTGGTGGTGGCGCAAGGGGTA 
CTGGAAGTGCGGGTCAACGAAGAGCGTTTCCTGCTCGCCACCGGCGACTCGATCCTGTTCTACGCCGACCAG 
CCGCACAGCTACCGCAACCCCGCCGATAGCGAAGCGCTGGCGTACCTGGTGATGACCTACCCGGAGCGCCTG 
GACTGA