ViewGene
Locus Name:
GeneID:
Location:

GeneID:4015
TrivialName: PA14_42840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42840
PAO1 Ortholog Locus:PA1675
Sequence Length:558
Protein Length:185
Start: 3808139
Stop: 3808696
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05064.1|AE004595_3 (AE004595) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 184/185 (99%), Positives = 184/185 (99%)
Sequence:
ATGCAAGACGACGACTTTTCCCTGTTCAAGAGCGAGATGCGCGGCGTCAAGCGCATCTCGGTCGATCGAGCC
GATACCGGCAAACCTCGCAACGACCGCCAGCAACTCAAGCAGCGCCAGCTCAATGCCAGCGTGCGCAACGAC
GAAATCCGCGTCGACGGCCTGTCCGACCAGTTCGTCATCGACGTCGGCCCCGAGGACGAGCTGTCCTGGGCC
CGCGACGGCGTCCAGGAAAGCCAGTTGCGCAAGCTCAAGCAGGGCCTGGTGCCCTTCGACGGTAGCCTCGAC
CTGCACGGCATGAGCGTGGAGAAGGCCCGGCAGACGCTGTGGGACTTCCTTGCCGAGGCCACCCGCCTGGAA
ATCCGCTGCGTGCGCGTGACCCATGGCAAGGCCGCGCGCAAGGACGGACGCAGCCCGCTGGTGAAAAGCCAC
GTCAATACCTGGTTGCGCCAACACCCGCAGGTGCTCGGTTTCACCTCCTGCCTGCCACGCCACGGCGGCACC
GGCTCGGCCTACGTGATGCTGCGCAGGACCATGCTCGAAGGCCGCGACGAGTAG
Translation:
MQDDDFSLFKSEMRGVKRISVDRADTGKPRNDRQQLKQRQLNASVRNDEIRVDGLSDQFVIDVGPEDELSWA
RDGVQESQLRKLKQGLVPFDGSLDLHGMSVEKARQTLWDFLAEATRLEIRCVRVTHGKAARKDGRSPLVKSH
VNTWLRQHPQVLGFTSCLPRHGGTGSAYVMLRRTMLEGRDE*
AnnotationID:4022GeneID:4015
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 19:07:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1675
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67443.1|AE016371_9 (AE016780) Smr domain protein [Pseudomonas putida KT2440]
          Length = 186

 Score =  288 bits (738), Expect = 9e-78
 Identities = 138/186 (74%), Positives = 162/186 (87%), Gaps = 1/186 (0%)

>gb|AAO55555.1| (AE016863) Smr domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 185

 Score =  282 bits (721), Expect = 8e-76
 Identities = 132/185 (71%), Positives = 157/185 (84%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8032




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25175




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37195




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4015_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4015
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6251
                           PA1675_tr
                           translation of PA1675
                           185
                           99.45
                           99.45
                           0
                           958.0
     

     
     
172680
                           gb|AAG05064.1|AE004595_3
                           (AE004595) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           185
                           99.45
                           99.45
                           0
                           958.0
     

     
     
172681
                           gb|AAN67443.1|AE016371_9
                           (AE016780) Smr domain protein [Pseudomonas putida KT2440]
                           186
                           74.19
                           87.09
                           1
                           740.0
     

     
     
172682
                           gb|AAO55555.1|
                           (AE016863) Smr domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           185
                           71.35
                           84.86
                           0
                           721.0
     

     






      

          
GC ORFID: 47017How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1675Glimmer Score: 

          
Start: 1145770Stop: 1145213

          
Length: 558


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1675 translation of PA1675Homolog Bit Score 373.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene557 (ORF: BLASTX 283.0), t_PA1675 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGACGACGACTTTTCCCTGTTCAAGAGCGAGATGCGCGGCGTCAAGCGCATCTCGGTCGATCGAGCC 
GATACCGGCAAACCTCGCAACGACCGCCAGCAACTCAAGCAGCGCCAGCTCAATGCCAGCGTGCGCAACGAC 
GAAATCCGCGTCGACGGCCTGTCCGACCAGTTCGTCATCGACGTCGGCCCCGAGGACGAGCTGTCCTGGGCC 
CGCGACGGCGTCCAGGAAAGCCAGTTGCGCAAGCTCAAGCAGGGCCTGGTGCCCTTCGACGGTAGCCTCGAC 
CTGCACGGCATGAGCGTGGAGAAGGCCCGGCAGACGCTGTGGGACTTCCTTGCCGAGGCCACCCGCCTGGAA 
ATCCGCTGCGTGCGCGTGACCCATGGCAAGGCCGCGCGCAAGGACGGACGCAGCCCGCTGGTGAAAAGCCAC 
GTCAATACCTGGTTGCGCCAACACCCGCAGGTGCTCGGTTTCACCTCCTGCCTGCCACGCCACGGCGGCACC 
GGCTCGGCCTACGTGATGCTGCGCAGGACCATGCTCGAAGGCCGCGACGAGTAG