ViewGene
Locus Name:
GeneID:
Location:

GeneID:4013
TrivialName: PA14_73060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73060
PAO1 Ortholog Locus:PA5540
Sequence Length:561
Protein Length:186
Start: 6505800
Stop: 6506360
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08925.1|AE004966_7 (AE004966) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 186/186 (100%), Positives = 186/186 (100%)
Sequence:
ATGATCCGCAAGAATCCCTCCGGCGACCTGCCGGTGATCGACGAATCGGCCTATGTGGACAAGACCGCGATC
ATCTGCGGCAAGGTGATCATCCAGGCCAACGTCTTCGTCGGTCCCTACGCAGTGATCCGTGCCGACGAAGTC
GACGCCGACGGCGGCATGCAACCGATCGTGATCGGCGCCAACTCGAACATCCAGGACGGCGTGGTGATCCAT
TCTAAGTCGGGTGCCGCGGTGACCATCGGCGAGCACAGCTCCATCGCCCACCGCTCCATCGTCCACGGTCCT
TGCGAAGTCGGCGACCGGGTCTTCATCGGCTTCAACAGCGTGCTGTTCAACTGCCGGGTCGGCGATGGCTGC
GTGGTCCGCCACAACGCGGTGGTCGACGGCTGCGACCTGCCAGCGGGTTTCTACGTCCCGTCCACCGAGCGC
ATCGGTCCGCGCACCGACCTGGCGAGCATGCCGCGGGTCAGCGTTTCCGCCAGCGAGTTCTCGGAAGACGTG
GCGCGCACCAACGTCGACCTGGTACGCGGCTACAAGTCACTGCAGAACGAGTTCTGA
Translation:
MIRKNPSGDLPVIDESAYVDKTAIICGKVIIQANVFVGPYAVIRADEVDADGGMQPIVIGANSNIQDGVVIH
SKSGAAVTIGEHSSIAHRSIVHGPCEVGDRVFIGFNSVLFNCRVGDGCVVRHNAVVDGCDLPAGFYVPSTER
IGPRTDLASMPRVSVSASEFSEDVARTNVDLVRGYKSLQNEF*
AnnotationID:4020GeneID:4013
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:30
Gene Name:
Confidence Code:3
GeneProduct:putative carbonic anhydrase-related protein
Cell Localization:()
Synonyms:cynT
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0663
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56084.1| (AE016865) carbonic anhydrase-related protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 186

 Score =  318 bits (814), Expect = 1e-86
 Identities = 158/186 (84%), Positives = 169/186 (90%)

>emb|CAD85118.1| (BX321860) Bacterial transferase hexapeptide repeat [Nitrosomonas
           europaea ATCC 19718]
          Length = 186

 Score =  301 bits (771), Expect = 1e-81
 Identities = 141/185 (76%), Positives = 164/185 (88%)

>gb|AAO28650.1| (AE012556) carbonic anhydrase [Xylella fastidiosa Temecula1]
          Length = 211

 Score =  292 bits (748), Expect = 6e-79
 Identities = 141/185 (76%), Positives = 161/185 (87%)






 
Structural Features:
COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 
CD-Length = 176 residues,  99.4% aligned
Score =  161 bits (408), Expect = 6e-41
Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 11/185 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8028




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25171




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33320




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4013_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4013
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6250
                           PA5540_tr
                           translation of PA5540
                           186
                           99.99
                           99.99
                           0
                           960.0
     

     
     
172670
                           gb|AAG08925.1|AE004966_7
                           (AE004966) hypothetical protein PA5540 [Pseudomonas aeruginosa PAO1]
                           186
                           99.99
                           99.99
                           0
                           960.0
     

     
     
172671
                           gb|AAO56084.1|
                           (AE016865) carbonic anhydrase-related protein [Pseudomonas syringae pv. tomato str. DC3000]
                           186
                           84.94
                           90.86
                           0
                           814.0
     

     
     
172672
                           emb|CAD85118.1|
                           (BX321860) Bacterial transferase hexapeptide repeat [Nitrosomonas europaea ATCC 19718]
                           186
                           75.80
                           88.17
                           0
                           771.0
     

     
     
172675
                           gb|AAF04316.1|
                           (AF150928) carbonic anhydrase homolog [Acinetobacter sp. ADP1]
                           186
                           70.96
                           84.40
                           1
                           719.0
     

     






      

          
GC ORFID: 47015How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5540Glimmer Score: 

          
Start: 5769489Stop: 5770049

          
Length: 561


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5540 translation of PA5540Homolog Bit Score 374.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1233 (ORF: BLASTX 312.0), t_PA5540 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGCAAGAATCCCTCCGGCGACCTGCCGGTGATCGACGAATCGGCCTATGTGGACAAGACCGCGATC 
ATCTGCGGCAAGGTGATCATCCAGGCCAACGTCTTCGTCGGTCCCTACGCAGTGATCCGTGCCGACGAAGTC 
GACGCCGACGGCGGCATGCAACCGATCGTGATCGGCGCCAACTCGAACATCCAGGACGGCGTGGTGATCCAT 
TCTAAGTCGGGTGCCGCGGTGACCATCGGCGAGCACAGCTCCATCGCCCACCGCTCCATCGTCCACGGTCCT 
TGCGAAGTCGGCGACCGGGTCTTCATCGGCTTCAACAGCGTGCTGTTCAACTGCCGGGTCGGCGATGGCTGC 
GTGGTCCGCCACAACGCGGTGGTCGACGGCTGCGACCTGCCAGCGGGTTTCTACGTCCCGTCCACCGAGCGC 
ATCGGTCCGCGCACCGACCTGGCGAGCATGCCGCGGGTCAGCGTTTCCGCCAGCGAGTTCTCGGAAGACGTG 
GCGCGCACCAACGTCGACCTGGTACGCGGCTACAAGTCACTGCAGAACGAGTTCTGA