ViewGene
Locus Name:
GeneID:
Location:

GeneID:4012
TrivialName: PA14_71320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71320
PAO1 Ortholog Locus:PA5402
Sequence Length:570
Protein Length:189
Start: 6355205
Stop: 6355774
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08787.1|AE004953_1 (AE004953) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 189/189 (100%), Positives = 189/189 (100%)
Sequence:
ATGGCGCTGTCCACGCATCTCAGCAACCACAAGCTCTATCTGCTCGGCATGCTCTGCGCCATCCTGGCCTGG
GGCATGGCCTGCATCGAACTCGGAGCGAACACCCACCTCTGGTTCTCCGGCCTCAGCGAGCAGGGCTACCTG
CAGGCCTGGAGCGATGAAATGCCGCGCCTGGCCAGCGACGGCTTCGTCCTGTCCTGGAGCAGCCGGGCGCTG
CTGATGCTGCTGGACTACCTGCCGACCCTGCTTTCCGCGTTCGGCCTGGCGCTCACCGGCCTGTTCTTCCGC
CGCCTGGCCAAGGGCGAACGCTGGTCGCAGCGCAACGCCAGGACCCTGGTGCACATCGGCCTGCTGTCCTTC
CTGGCACTCTTGCTCCAGCCATTTATCAATACGCTGCAAGGTCTTGTACTATCTCTCGACCTGCCCGACGGC
GAGCGTGTCCTGAGCGTTTCGATAGGACTCACTTCCGAAGCGGCCTACGAGTTCCTCAAGGCGATCTTTCTC
TGCTCGTTCGGCCTGATGATGAGCGAAGCCAGGAAACTGGACGAAGAAGTAAGAGCCTTCATATGA
Translation:
MALSTHLSNHKLYLLGMLCAILAWGMACIELGANTHLWFSGLSEQGYLQAWSDEMPRLASDGFVLSWSSRAL
LMLLDYLPTLLSAFGLALTGLFFRRLAKGERWSQRNARTLVHIGLLSFLALLLQPFINTLQGLVLSLDLPDG
ERVLSVSIGLTSEAAYEFLKAIFLCSFGLMMSEARKLDEEVRAFI*
AnnotationID:4019GeneID:4012
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:09
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA5402
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8026




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25169




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4012
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6249
                           PA5402_tr
                           translation of PA5402
                           189
                           99.99
                           99.99
                           0
                           959.0
     

     
     
172668
                           gb|AAG08787.1|AE004953_1
                           (AE004953) hypothetical protein PA5402 [Pseudomonas aeruginosa PAO1]
                           189
                           99.99
                           99.99
                           0
                           959.0
     

     
     
172669
                           emb|CAE16001.1|
                           (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           193
                           39.89
                           54.92
                           5
                           318.0
     

     






      

          
GC ORFID: 47014How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5402Glimmer Score: 

          
Start: 5618894Stop: 5619463

          
Length: 570


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5402 translation of PA5402Homolog Bit Score 374.0

          
Other Homologs:  t_PA5402 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGCTGTCCACGCATCTCAGCAACCACAAGCTCTATCTGCTCGGCATGCTCTGCGCCATCCTGGCCTGG 
GGCATGGCCTGCATCGAACTCGGAGCGAACACCCACCTCTGGTTCTCCGGCCTCAGCGAGCAGGGCTACCTG 
CAGGCCTGGAGCGATGAAATGCCGCGCCTGGCCAGCGACGGCTTCGTCCTGTCCTGGAGCAGCCGGGCGCTG 
CTGATGCTGCTGGACTACCTGCCGACCCTGCTTTCCGCGTTCGGCCTGGCGCTCACCGGCCTGTTCTTCCGC 
CGCCTGGCCAAGGGCGAACGCTGGTCGCAGCGCAACGCCAGGACCCTGGTGCACATCGGCCTGCTGTCCTTC 
CTGGCACTCTTGCTCCAGCCATTTATCAATACGCTGCAAGGTCTTGTACTATCTCTCGACCTGCCCGACGGC 
GAGCGTGTCCTGAGCGTTTCGATAGGACTCACTTCCGAAGCGGCCTACGAGTTCCTCAAGGCGATCTTTCTC 
TGCTCGTTCGGCCTGATGATGAGCGAAGCCAGGAAACTGGACGAAGAAGTAAGAGCCTTCATATGA