ViewGene
Locus Name:
GeneID:
Location:

GeneID:4011
TrivialName: PA14_48440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48440
PAO1 Ortholog Locus:
Sequence Length:606
Protein Length:201
Start: 4306157
Stop: 4306762
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04614.1|AE004552_4 (AE004552) probable NAD(P)H dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 184/194 (94%), Positives = 188/194 (96%)
Sequence:
ATGCATGCCCTGATCGTCGTCGCTCATCATCATCCCCGCTCTCTCACCCTCGCCCTCACCGCGCGCATCGCC
GAAGGCGTAGTCCGCGCCGGCCATTCCGCGGAAACCGCCGATCTGGCGGCGGAAGGCTTCGAGCCGCGCTTC
GGCCTGGCCGACCACGCCGTGCATCGCGGCCAGGCGTCGCCTCCCGCCGACGTCCTCGCCGAGCAGGCGCGC
ATCGATCGCGCCGATACCCTGGTGCTGGTCTACCCGATCTACTGGTGGTCGATGCCGGCCCTGCTCAAGGGC
TGGATCGATCGCGTGTTCTCCAATGGCTGGGCCTTCGACTACAGCATCGGCGGCGACCTGCGGAAAAAGCTG
CAGCGCCTGCGCGTGGTGCTGGTCGGTGTCGGCGGCGCCGATGCCGGCACCTTCGAGCGGCACGGCTACGCC
GGGGCGATGCGCACCCAGATCGACCATGGCATCTTCGATTACTGCGGCGCACGGGTGGTCCGTTCCGAACTG
TTGCTGGAGTCGGAGAGCGCCGATCCAGCCGCGCACCTGGAGCAGGCTCGGCGAATCGGCGCCGAGCTGTTC
GCCAGTGCCCGGCGGCCGATGCCGGCCTGA
Translation:
MHALIVVAHHHPRSLTLALTARIAEGVVRAGHSAETADLAAEGFEPRFGLADHAVHRGQASPPADVLAEQAR
IDRADTLVLVYPIYWWSMPALLKGWIDRVFSNGWAFDYSIGGDLRKKLQRLRVVLVGVGGADAGTFERHGYA
GAMRTQIDHGIFDYCGARVVRSELLLESESADPAAHLEQARRIGAELFASARRPMPA*
AnnotationID:4018GeneID:4011
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 21:09:16
Gene Name:
Confidence Code:3
GeneProduct:putative NAD(P)H dehydrogenase
Cell Localization:()
Synonyms:PA1225
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02525,COG2249
Secondary Functional Category(ies):
EC Number:1.6.99.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM37082.1| (AE011860) NAD(P)H dehydrogenase [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 198

 Score =  226 bits (576), Expect = 6e-59
 Identities = 113/193 (58%), Positives = 139/193 (72%), Gaps = 6/193 (3%)








 
Structural Features:
pfam02525, Flavodoxin_2, Flavodoxin-like fold.
CD-Length = 196 residues,  98.5% aligned
Score =  166 bits (421), Expect = 2e-42
Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 6/196 (3%)

COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B)
CD-Length = 189 residues, 100.0% aligned
Score =  151 bits (383), Expect = 5e-38
Identities = 69/198 (34%), Positives = 95/198 (47%), Gaps = 14/198 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8024




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25167




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37530




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4011_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4011
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6248
                           PA1225_tr
                           translation of PA1225
                           208
                           89.42
                           92.30
                           7
                           958.0
     

     
     
172663
                           gb|AAG04614.1|AE004552_4
                           (AE004552) probable NAD(P)H dehydrogenase [Pseudomonas aeruginosa PAO1]
                           208
                           89.42
                           92.30
                           7
                           958.0
     

     
     
172665
                           emb|CAE45109.1|
                           (AJ579894) putative NAD(P)H dehydrogenase [Pseudomonas sp. Y2]
                           201
                           56.21
                           67.16
                           10
                           560.0
     

     
     
172664
                           gb|AAM37082.1|
                           (AE011860) NAD(P)H dehydrogenase [Xanthomonas axonopodis pv. citri str. 306]
                           203
                           56.15
                           69.45
                           7
                           581.0
     

     
     
172666
                           gb|AAM39379.1|
                           (AE012100) NAD(P)H oxidoreductase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           202
                           49.00
                           60.89
                           31
                           499.0
     

     






      

          
GC ORFID: 47013How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1225Glimmer Score: 

          
Start: 647751Stop: 647146

          
Length: 606


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1225 translation of PA1225Homolog Bit Score 374.0

          
Other Homologs:  t_PA1225 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATGCCCTGATCGTCGTCGCTCATCATCATCCCCGCTCTCTCACCCTCGCCCTCACCGCGCGCATCGCC 
GAAGGCGTAGTCCGCGCCGGCCATTCCGCGGAAACCGCCGATCTGGCGGCGGAAGGCTTCGAGCCGCGCTTC 
GGCCTGGCCGACCACGCCGTGCATCGCGGCCAGGCGTCGCCTCCCGCCGACGTCCTCGCCGAGCAGGCGCGC 
ATCGATCGCGCCGATACCCTGGTGCTGGTCTACCCGATCTACTGGTGGTCGATGCCGGCCCTGCTCAAGGGC 
TGGATCGATCGCGTGTTCTCCAATGGCTGGGCCTTCGACTACAGCATCGGCGGCGACCTGCGGAAAAAGCTG 
CAGCGCCTGCGCGTGGTGCTGGTCGGTGTCGGCGGCGCCGATGCCGGCACCTTCGAGCGGCACGGCTACGCC 
GGGGCGATGCGCACCCAGATCGACCATGGCATCTTCGATTACTGCGGCGCACGGGTGGTCCGTTCCGAACTG 
TTGCTGGAGTCGGAGAGCGCCGATCCAGCCGCGCACCTGGAGCAGGCTCGGCGAATCGGCGCCGAGCTGTTC 
GCCAGTGCCCGGCGGCCGATGCCGGCCTGA