ViewGene

Locus Name:
GeneID:
Location:

GeneID:4010
TrivialName: PA14_51280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51280
PAO1 Ortholog Locus:PA1009
Sequence Length:558
Protein Length:185
Start: 4556864
Stop: 4557421
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04398.1|AE004533_9 (AE004533) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 185/185 (100%), Positives = 185/185 (100%)
Sequence:
ATGTCCACCAGCCAACCCCGCGAACAATTCCTTCTGATCAGCGCCCTCGGCCCCAATCCGATGGAGCTGACC
ACCCTGCTCTGCCGCGCCTGCGTCGAGAGCCGCTGCGCCGTGGTCAGCAGCCGCCTGACCCGCCACGGAGAG
TTCAGCGCCCTGGTGCTGCAGATCTCCGGAAGCTGGGATGCCCTCGCCCGCCTCGAGGGCAGCCTGCCGGCC
CTCACCAAGCGCGGCGACATCACCCTCAGCATGACCCGCAGCAACGCCCACGTGACCCGCGCCCAGGCGTTG
CCTTACGTGGCCTATGTCAGCGCGGTGTATCGCCCGGACATCCTCAACGAACTCTGCCAGTTCTTCATCGAC
CACAACATCGAGCTGGAGAACCTGACCTGCGACACCTACCAGGCGCCGCACACCAACACCACCATGCTCAAC
GCCACGATTACCGTGACGCTGCCCGCCGGCACCCAGATCAGCTGGCTGCGCGACCAGTTCCTGGACTTCGCC
GACGCCCTGAACCTGGATGCCCTGATCGAACCCTGGCGCCCCCAACACCCCTGA
Translation:
MSTSQPREQFLLISALGPNPMELTTLLCRACVESRCAVVSSRLTRHGEFSALVLQISGSWDALARLEGSLPA
LTKRGDITLSMTRSNAHVTRAQALPYVAYVSAVYRPDILNELCQFFIDHNIELENLTCDTYQAPHTNTTMLN
ATITVTLPAGTQISWLRDQFLDFADALNLDALIEPWRPQHP*
AnnotationID:4017GeneID:4010
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 16:04:17
Gene Name:
Confidence Code:3
GeneProduct:Putative glycine cleavage system transcriptional repressor
Cell Localization:()
Synonyms:PA1009
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2716
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid 
transport and metabolism]
        CD-Length = 176 residues, 100.0% aligned
        Score =  217 bits (554), Expect = 8e-58
Genomic Context:
Downstream gene is bcp (bacterioferritin comigratory protein); in Escherichia
coli, bcp is downstream from gcvR (glycine cleavage repressor protein) 
Comment:
ReferenceID:8022
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25165
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4010

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6247 PA1009_tr translation of PA1009 185 99.99 99.99 0 961.0
172660 gb|AAG04398.1|AE004533_9 (AE004533) hypothetical protein PA1009 [Pseudomonas aeruginosa PAO1] 185 99.99 99.99 0 961.0
172661 gb|AAO57415.1| (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 187 74.86 83.42 2 724.0
172662 gb|AAN66860.1|AE016314_7 (AE016778) glycine cleavage system transcriptional repressor, putative [Pseudomonas putida KT2440] 186 73.11 82.25 1 710.0
GC ORFID: 47012How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1009Glimmer Score:
Start: 397043Stop: 396486
Length: 558
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1009 translation of PA1009Homolog Bit Score 374.0
Other Homologs: psyr_15may02_Scaffold10_revised_gene1555 (ORF: BLASTX 283.0), t_PA1009 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCACCAGCCAACCCCGCGAACAATTCCTTCTGATCAGCGCCCTCGGCCCCAATCCGATGGAGCTGACC
ACCCTGCTCTGCCGCGCCTGCGTCGAGAGCCGCTGCGCCGTGGTCAGCAGCCGCCTGACCCGCCACGGAGAG
TTCAGCGCCCTGGTGCTGCAGATCTCCGGAAGCTGGGATGCCCTCGCCCGCCTCGAGGGCAGCCTGCCGGCC
CTCACCAAGCGCGGCGACATCACCCTCAGCATGACCCGCAGCAACGCCCACGTGACCCGCGCCCAGGCGTTG
CCTTACGTGGCCTATGTCAGCGCGGTGTATCGCCCGGACATCCTCAACGAACTCTGCCAGTTCTTCATCGAC
CACAACATCGAGCTGGAGAACCTGACCTGCGACACCTACCAGGCGCCGCACACCAACACCACCATGCTCAAC
GCCACGATTACCGTGACGCTGCCCGCCGGCACCCAGATCAGCTGGCTGCGCGACCAGTTCCTGGACTTCGCC
GACGCCCTGAACCTGGATGCCCTGATCGAACCCTGGCGCCCCCAACACCCCTGA