ViewGene

Locus Name:
GeneID:
Location:

GeneID:4009
TrivialName: PA14_10680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10680
PAO1 Ortholog Locus:PA4118
Sequence Length:570
Protein Length:189
Start: 920968
Stop: 920399
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07505.1|AE004828_6 (AE004828) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 189/189 (100%), Positives = 189/189 (100%)
Sequence:
ATGCCCCGCCTCCGCCTCCGGACCGTCCTCGCCTGCCTCGCCGTGTTCTGCGCGACTCCCGCACTGGCCAGG
GTCGAAGTGCATTCGCTGCAACACAAGAGCATGGGGCGGGTGCTGACGGTCCGCGTCTCGGAGGAGATCGCG
CCGGGCGACTACGAGACGCTGCTCAAGGGTTTGCGCAACAATCCGGGAACCTACTCGCGCAAGCTGCTCCTG
CTGAACAGCATCGGCGGCAGCGTGCCGGAGGCGATCCGCATGGGCCGCCTGCTGCGCGAATCCGGCTTCGAC
GCGCTGGTGCCGTCGAGCAGCGTCTGCCAGGGCACCTGCGTCTACCTGCTGGCGGCCGGCAAGCGCAAGACC
GTACGCGGCTACGTCGGCCTGCACCGTCCCTACTACGCCCACGGCGACTCGCTGCACTCGCGCTCGGCCAAC
GGCATGCGCTACGACTCCGCCGCCTACTTCCGCGAAATGGATATCCCCAGCACCTTGGTACAGGCCATGCAA
AGCACCGATCCCAAACGGATGCGCGTGCTTTCGGCGAAGGAACTGGCGCAGTACCGGCTGAACTGA
Translation:
MPRLRLRTVLACLAVFCATPALARVEVHSLQHKSMGRVLTVRVSEEIAPGDYETLLKGLRNNPGTYSRKLLL
LNSIGGSVPEAIRMGRLLRESGFDALVPSSSVCQGTCVYLLAAGKRKTVRGYVGLHRPYYAHGDSLHSRSAN
GMRYDSAAYFREMDIPSTLVQAMQSTDPKRMRVLSAKELAQYRLN*
AnnotationID:4016GeneID:4009
AnnotatorUID: diggins
Modification Date/Time: 2005-06-07 07:07:52
Gene Name:
Confidence Code:4
GeneProduct:putative periplasmic protein
Cell Localization:(8) Periplasmic
Synonyms:PA4118
Cell Localization Confidence Code:4
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3904
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3904, Predicted periplasmic protein
CD-Length = 245 residues,  81.2% aligned
Score =  235 bits (601), Expect = 2e-63
Identities = 70/199 (35%), Positives = 92/199 (46%), Gaps = 10/199 (5%)
Genomic Context:
Comment:
ReferenceID:8020
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25163
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36877
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4009_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4009

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6246 PA4118_tr translation of PA4118 189 99.99 99.99 0 962.0
172658 gb|AAG07505.1|AE004828_6 (AE004828) hypothetical protein PA4118 [Pseudomonas aeruginosa PAO1] 189 99.99 99.99 0 962.0
172659 emb|CAA62366.1| (X90856) putative GTP binding protein [Pseudomonas aeruginosa] 189 99.99 99.99 0 962.0
GC ORFID: 47011How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4118Glimmer Score:
Start: 4032969Stop: 4033538
Length: 570
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4118 translation of PA4118Homolog Bit Score 375.0
Other Homologs: t_PA4118 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCCGCCTCCGCCTCCGGACCGTCCTCGCCTGCCTCGCCGTGTTCTGCGCGACTCCCGCACTGGCCAGG
GTCGAAGTGCATTCGCTGCAACACAAGAGCATGGGGCGGGTGCTGACGGTCCGCGTCTCGGAGGAGATCGCG
CCGGGCGACTACGAGACGCTGCTCAAGGGTTTGCGCAACAATCCGGGAACCTACTCGCGCAAGCTGCTCCTG
CTGAACAGCATCGGCGGCAGCGTGCCGGAGGCGATCCGCATGGGCCGCCTGCTGCGCGAATCCGGCTTCGAC
GCGCTGGTGCCGTCGAGCAGCGTCTGCCAGGGCACCTGCGTCTACCTGCTGGCGGCCGGCAAGCGCAAGACC
GTACGCGGCTACGTCGGCCTGCACCGTCCCTACTACGCCCACGGCGACTCGCTGCACTCGCGCTCGGCCAAC
GGCATGCGCTACGACTCCGCCGCCTACTTCCGCGAAATGGATATCCCCAGCACCTTGGTACAGGCCATGCAA
AGCACCGATCCCAAACGGATGCGCGTGCTTTCGGCGAAGGAACTGGCGCAGTACCGGCTGAACTGA