ViewGene
Locus Name:
GeneID:
Location:

GeneID:4008
TrivialName: PA14_12740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12740
PAO1 Ortholog Locus:PA3952
Sequence Length:576
Protein Length:191
Start: 1091836
Stop: 1092411
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07339.1|AE004813_6 (AE004813) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 188/191 (98%), Positives = 189/191 (98%)
Sequence:
ATGGCGCAGGTGGTGCTGATCCAGGAAGCCGCGCTGAAGCGCCTCGACCAACGGGTGAAGGAGCTCGAGGCG
CAGGTCGCCCAGTTGCAGCAGAGCCGTCCGAGCAGCGGCGGCTTCCTCTCCGGCCTGTTCGGTGGCGGCGCG
CGCGACGAGCCGGCGCCGAGCCAACCGGGGCGCCCGGCGGGCTGGGGCGAGACGCGTTTCTCCAATCCGGCG
GCGGGGGCCGGCGACATGCGTCCGGGTATGGCGCCCGCCGCGTCGGCCGCGCCTTCGCGGGCCAGCGGTTTT
CTCGGCGGCGCGTTGCAGACGGCCGCCGGGGTCGCTGGCGGGATGCTGGTGGCCGACCTGCTCACCGGCATG
TTCCGCCACAGCCAACCGCAGGAAATCGTCGAGGTGATCCAGGACGTCCCGGTGGATAACCTCGACGCCAGT
CAGTTTGCCGATCCCGAGCCGGCAACCGAGCGCTTCGCCGATAGCGACTATCCCGCCGACGGCGGTTTCGCC
GATGGCGATTTCAGCGATAGCGACTTCAACGACGACTCCAGCTTCCTCGGCGACGACGATTTGTTCACCTGA
Translation:
MAQVVLIQEAALKRLDQRVKELEAQVAQLQQSRPSSGGFLSGLFGGGARDEPAPSQPGRPAGWGETRFSNPA
AGAGDMRPGMAPAASAAPSRASGFLGGALQTAAGVAGGMLVADLLTGMFRHSQPQEIVEVIQDVPVDNLDAS
QFADPEPATERFADSDYPADGGFADGDFSDSDFNDDSSFLGDDDLFT*
AnnotationID:4015GeneID:4008
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 14:02:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3952
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3416
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG07339.1|AE004813_6 (AE004813) hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 191
Score =  375 bits (963), Expect = e-104
Identities = 188/191 (98%), Positives = 189/191 (98%)






 
Structural Features:
gnl|CDD|12747 COG3416, COG3416, Uncharacterized protein conserved in bacteria
[Function unknown]
Length = 233
Score =  186 bits (474), Expect = 3e-48
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 8/193 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8018




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25161




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4008
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6245
                           PA3952_tr
                           translation of PA3952
                           191
                           98.42
                           98.95
                           0
                           963.0
     

     
     
172655
                           gb|AAG07339.1|AE004813_6
                           (AE004813) hypothetical protein PA3952 [Pseudomonas aeruginosa PAO1]
                           191
                           98.42
                           98.95
                           0
                           963.0
     

     
     
172656
                           gb|AAN70340.1|AE016675_10
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           267
                           35.20
                           46.81
                           91
                           372.0
     

     
     
172657
                           gb|AAO58113.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           292
                           30.82
                           40.41
                           128
                           355.0
     

     






      

          
GC ORFID: 47010How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3952Glimmer Score: 

          
Start: 3862102Stop: 3861527

          
Length: 576


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3952 translation of PA3952Homolog Bit Score 375.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5378 (ORF: BLASTX 201.0), t_PA3952 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGCAGGTGGTGCTGATCCAGGAAGCCGCGCTGAAGCGCCTCGACCAACGGGTGAAGGAGCTCGAGGCG 
CAGGTCGCCCAGTTGCAGCAGAGCCGTCCGAGCAGCGGCGGCTTCCTCTCCGGCCTGTTCGGTGGCGGCGCG 
CGCGACGAGCCGGCGCCGAGCCAACCGGGGCGCCCGGCGGGCTGGGGCGAGACGCGTTTCTCCAATCCGGCG 
GCGGGGGCCGGCGACATGCGTCCGGGTATGGCGCCCGCCGCGTCGGCCGCGCCTTCGCGGGCCAGCGGTTTT 
CTCGGCGGCGCGTTGCAGACGGCCGCCGGGGTCGCTGGCGGGATGCTGGTGGCCGACCTGCTCACCGGCATG 
TTCCGCCACAGCCAACCGCAGGAAATCGTCGAGGTGATCCAGGACGTCCCGGTGGATAACCTCGACGCCAGT 
CAGTTTGCCGATCCCGAGCCGGCAACCGAGCGCTTCGCCGATAGCGACTATCCCGCCGACGGCGGTTTCGCC 
GATGGCGATTTCAGCGATAGCGACTTCAACGACGACTCCAGCTTCCTCGGCGACGACGATTTGTTCACCTGA