ViewGene
Locus Name:
GeneID:
Location:

GeneID:4007
TrivialName: PA14_25470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25470
PAO1 Ortholog Locus:PA2985
Sequence Length:534
Protein Length:177
Start: 2226150
Stop: 2225617
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06373.1|AE004724_2 (AE004724) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 177/177 (100%), Positives = 177/177 (100%)
Sequence:
ATGCCGCGTCGCCTGTTCAAGCGCTACATGCCCGATCCGGAAAGCATCCGCTCGCAGAAGTCGCTGCGCTTT
CTCGGCAAGTTGACGCACGATCCCAACCTTTGGCATCTCAATCGCCACTCGGTATCGCGCGCCATGGCCGCC
GGGCTGTTCGCCGCCTTCATCCCGATGCCGATGCAGATGCTGCTGGCGGCCGGTCTGGCGGTGTGGATTCGG
AGCAATCTGCCAATCTCCGTCGGATTGGTCTGGCTGACCAATCCGATCACGATGCCCCCGGTCTTCTATTGC
ACCTACAAGCTGGGCGCCTGGTTGATGCAGGTGCCGCCGCGCACCCTGCCGGACCATCTCACCTGGGAATGG
ATCAGCCAGGAGCTGTCCAGCCTCTGGCAGCCCTTCCTGCTCGGTTCGGTGGTGTGCGGCATCATCGCCGCC
ATCCTCGGCTACGCGCTGACGATGCTCTACTGGCGCTGGTGGGTGCAGCGCAGTTGGAGCCGACGCTGCCGG
CAACGTCGCGAACGGGTCGCCGCGAAGTGA
Translation:
MPRRLFKRYMPDPESIRSQKSLRFLGKLTHDPNLWHLNRHSVSRAMAAGLFAAFIPMPMQMLLAAGLAVWIR
SNLPISVGLVWLTNPITMPPVFYCTYKLGAWLMQVPPRTLPDHLTWEWISQELSSLWQPFLLGSVVCGIIAA
ILGYALTMLYWRWWVQRSWSRRCRQRRERVAAK*
AnnotationID:4014GeneID:4007
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 09:09:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2985
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8016




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25159




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4007
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6244
                           PA2985_tr
                           translation of PA2985
                           177
                           99.99
                           99.99
                           0
                           964.0
     

     
     
172648
                           gb|AAG06373.1|AE004724_2
                           (AE004724) hypothetical protein PA2985 [Pseudomonas aeruginosa PAO1]
                           177
                           99.99
                           99.99
                           0
                           964.0
     

     
     
172649
                           emb|CAB50916.1|
                           (AJ243354) hypothetical protein [Pseudomonas stutzeri]
                           177
                           64.40
                           75.70
                           6
                           647.0
     

     
     
172650
                           dbj|BAC59243.1|
                           (AP005076) conserved hypothetical protein [Vibrio parahaemolyticus]
                           177
                           49.71
                           69.49
                           8
                           488.0
     

     
     
172651
                           gb|AAF95028.1|
                           (AE004263) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           179
                           48.60
                           68.71
                           5
                           484.0
     

     






      

          
GC ORFID: 47009How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2985Glimmer Score: 

          
Start: 2727775Stop: 2728308

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2985 translation of PA2985Homolog Bit Score 375.0

          
Other Homologs:  t_PA2985 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCGTCGCCTGTTCAAGCGCTACATGCCCGATCCGGAAAGCATCCGCTCGCAGAAGTCGCTGCGCTTT 
CTCGGCAAGTTGACGCACGATCCCAACCTTTGGCATCTCAATCGCCACTCGGTATCGCGCGCCATGGCCGCC 
GGGCTGTTCGCCGCCTTCATCCCGATGCCGATGCAGATGCTGCTGGCGGCCGGTCTGGCGGTGTGGATTCGG 
AGCAATCTGCCAATCTCCGTCGGATTGGTCTGGCTGACCAATCCGATCACGATGCCCCCGGTCTTCTATTGC 
ACCTACAAGCTGGGCGCCTGGTTGATGCAGGTGCCGCCGCGCACCCTGCCGGACCATCTCACCTGGGAATGG 
ATCAGCCAGGAGCTGTCCAGCCTCTGGCAGCCCTTCCTGCTCGGTTCGGTGGTGTGCGGCATCATCGCCGCC 
ATCCTCGGCTACGCGCTGACGATGCTCTACTGGCGCTGGTGGGTGCAGCGCAGTTGGAGCCGACGCTGCCGG 
CAACGTCGCGAACGGGTCGCCGCGAAGTGA