ViewGene

Locus Name:
GeneID:
Location:

GeneID:4006
TrivialName: PA14_39580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39580
PAO1 Ortholog Locus:PA1928
Sequence Length:570
Protein Length:189
Start: 3522821
Stop: 3523390
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05316.1|AE004619_3 (AE004619) ribosomal protein alanine acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 185/189 (97%), Positives = 188/189 (99%)
Sequence:
TTGCCGGGCAACCGGCGGCAGGTGCCGATACTGCATCGCGACGCGGACTTCCTCCTGCGCGCGCTGCAACCC
GACGATTTCGTCCGGACCAGCCGCTACGAGAACGCCAACCGCGAGTACCTGGCGCCATGGGAGCCGCTGCGC
GACCCGGCGTATTTTTCCTTGGACAATGCCCGCGCCCGCACCCTGCTACAGGTGGCGAGCATGGACGAAGGC
GAGGCGCTTCTCCTGCTGTTGCTCGATCCCGACGACGGCGAGGTGCTGGGGCGCTGCAGCTACACCAACATC
GTCCGCGGGGTATTCCAGGCCTGCCACCTGGGCTTTTCCCTGGCCGCTGCGGCTCAGGGCCGCGGCCTGATG
GCGCGTGCCCTGCGGGTAGCCAACCGGTATTGCTTCGAGCAGCTCGGCCTGCACCGGATCATGGCCAGCCAC
CTGCCGCGCAACGCACGCAGCGAGCGCCTGCTGGAAAGCCTCGGCTTCGAGAGGGAGGGCTACGCCCGCGCC
TACCTGAAGATCGCCGGGGTCTGGGAAGACCATGTGCTACGGGCGCTGGTGGACGCTCCGCGCTGA
Translation:
MPGNRRQVPILHRDADFLLRALQPDDFVRTSRYENANREYLAPWEPLRDPAYFSLDNARARTLLQVASMDEG
EALLLLLLDPDDGEVLGRCSYTNIVRGVFQACHLGFSLAAAAQGRGLMARALRVANRYCFEQLGLHRIMASH
LPRNARSERLLESLGFEREGYARAYLKIAGVWEDHVLRALVDAPR*
AnnotationID:4013GeneID:4006
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 14:02:29
Gene Name:rimJ
Confidence Code:2
GeneProduct:ribosomal protein alanine acetyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:acetylation of N-terminal alanine of 30S ribosomal subunit protein S5
Functional Category Confidence Code:5
COGs:COG1670
Secondary Functional Category(ies):
EC Number:2.3.1.128
Status:ACTIVE
Pathway:
Homology:
>gb|AAL20097.1| (AE008750) acetylation of N-terminal alanine of 30S ribosomal
           subunit protein S5 [Salmonella typhimurium LT2]
          Length = 194

 Score =  147 bits (370), Expect = 4e-35
 Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 1/185 (0%)

>gb|AAO69377.1| (AE016840) ribosomal-protein-alanine acetyltransferase [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 194

 Score =  147 bits (370), Expect = 4e-35
 Identities = 81/185 (43%), Positives = 110/185 (59%), Gaps = 1/185 (0%)
Structural Features:
COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins 
[Translation, ribosomal structure and biogenesis]
CD-Length = 187 residues,  91.4% aligned
Score = 99.7 bits (247), Expect = 2e-22
Identities = 55/172 (31%), Positives = 75/172 (43%), Gaps = 2/172 (1%)

Genomic Context:
Comment:
ReferenceID:14988
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25157
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32778
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4006_cdd.html
URL:
ReferenceID:34349
Author/Investigator(s): Yoshikawa A, Isono S, Sheback A, Isono K.
Title: Cloning and nucleotide sequencing of the genes rimI and rimJ which encode enzymes acetylating ribosomal proteins S18 and S5 of Escherichia coli K12.
PubMed: 2828880
MedLine:
Source:
Mol Gen Genet. 1987 Oct;209(3):481-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2828880
Homologs By Global Alignment
Gene ID:4006

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6243 PA1928_tr translation of PA1928 189 97.88 99.47 0 963.0
172626 gb|AAG05316.1|AE004619_3 (AE004619) ribosomal protein alanine acetyltransferase [Pseudomonas aeruginosa PAO1] 189 97.35 99.47 0 961.0
172627 emb|CAE14383.1| (BX571866) Ribosomal-protein-alanine acetyltransferase (Acetylating enzyme for N-terminal of ribosomal protein S5) [Photorhabdus luminescens subsp. laumondii TTO1] 197 42.63 58.37 11 386.0
172628 gb|AAL20097.1| (AE008750) acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2] 195 41.02 56.92 7 364.0
172629 gb|AAO69377.1| (AE016840) ribosomal-protein-alanine acetyltransferase [Salmonella enterica subsp. enterica serovar Typhi Ty2] 195 41.02 56.92 7 364.0
GC ORFID: 47008How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1928Glimmer Score:
Start: 1431090Stop: 1430521
Length: 570
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1928 translation of PA1928Homolog Bit Score 375.0
Other Homologs: t_PA1928 (ORF: GLIMMER)
GC ORF Sequence
TTGCCGGGCAACCGGCGGCAGGTGCCGATACTGCATCGCGACGCGGACTTCCTCCTGCGCGCGCTGCAACCC
GACGATTTCGTCCGGACCAGCCGCTACGAGAACGCCAACCGCGAGTACCTGGCGCCATGGGAGCCGCTGCGC
GACCCGGCGTATTTTTCCTTGGACAATGCCCGCGCCCGCACCCTGCTACAGGTGGCGAGCATGGACGAAGGC
GAGGCGCTTCTCCTGCTGTTGCTCGATCCCGACGACGGCGAGGTGCTGGGGCGCTGCAGCTACACCAACATC
GTCCGCGGGGTATTCCAGGCCTGCCACCTGGGCTTTTCCCTGGCCGCTGCGGCTCAGGGCCGCGGCCTGATG
GCGCGTGCCCTGCGGGTAGCCAACCGGTATTGCTTCGAGCAGCTCGGCCTGCACCGGATCATGGCCAGCCAC
CTGCCGCGCAACGCACGCAGCGAGCGCCTGCTGGAAAGCCTCGGCTTCGAGAGGGAGGGCTACGCCCGCGCC
TACCTGAAGATCGCCGGGGTCTGGGAAGACCATGTGCTACGGGCGCTGGTGGACGCTCCGCGCTGA