ViewGene
Locus Name:
GeneID:
Location:

GeneID:4005
TrivialName: PA14_48190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48190
PAO1 Ortholog Locus:PA1241
Sequence Length:561
Protein Length:186
Start: 4291783
Stop: 4291223
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04630.1|AE004553_7 (AE004553) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 186/186 (100%), Positives = 186/186 (100%)
Sequence:
GTGCGTCCGTTGAAAATCTCCCGCGACGAGCTTCTCCAGCGCTGCGCCGGCACCTTCCGTCGCTACGGCTAC
CACGGCACCACCATGGAAATGCTGTCCAGCGCCTGCGGCTTGACCAAGGCCTCGTTCTACCACCACTACCCG
AACAAGGAAGCCTTGCTCCGCGACGTTCTCGAATGGACCCACCAGCGGCTCGCCGAGACGCTCTTCAGCATC
GCCTACGACCCGCTGCTGACGCCCCGCGAGCGCCTGGAAAAACTCGGCCGCAAGGCCGCCCGGTTGTTCCAG
GACGACAGCATCGGCTGCCTGATGGGCGTGGTCGCGGTCGACGCCAGCTATGGTCGCAGCGAGCTGATGGCG
CCGATCCGCAGTTTCCTCGACGACTGGGCGCAAGCCTTCGCCCAGCTCTACCGCCCGGCCTTCGACGAGGCG
CAGGCGCTGGAGCGCGGCCGGCAACTGGTGGCCGATTTCGAAGGCGCCATCCTGCTGGCGCGCATCTATGGC
GAGCCGGGCTATATCGATGGCGTCACCCGGCGAGCGCTGGAGCAACTGGCGGGCTAG
Translation:
MRPLKISRDELLQRCAGTFRRYGYHGTTMEMLSSACGLTKASFYHHYPNKEALLRDVLEWTHQRLAETLFSI
AYDPLLTPRERLEKLGRKAARLFQDDSIGCLMGVVAVDASYGRSELMAPIRSFLDDWAQAFAQLYRPAFDEA
QALERGRQLVADFEGAILLARIYGEPGYIDGVTRRALEQLAG*
AnnotationID:4012GeneID:4005
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 09:09:14
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1241
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 49.6 bits (119), Expect = 2e-07
Identities = 15/47 (31%), Positives = 25/47 (53%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14986




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25155




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37516




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4005_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4005
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6242
                           PA1241_tr
                           translation of PA1241
                           186
                           99.99
                           99.99
                           0
                           962.0
     

     
     
172625
                           gb|AAG04630.1|AE004553_7
                           (AE004553) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           186
                           99.46
                           99.99
                           0
                           959.0
     

     






      

          
GC ORFID: 47007How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1241Glimmer Score: 

          
Start: 662125Stop: 662685

          
Length: 561


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1241 translation of PA1241Homolog Bit Score 375.0

          
Other Homologs:  t_PA1241 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGTCCGTTGAAAATCTCCCGCGACGAGCTTCTCCAGCGCTGCGCCGGCACCTTCCGTCGCTACGGCTAC 
CACGGCACCACCATGGAAATGCTGTCCAGCGCCTGCGGCTTGACCAAGGCCTCGTTCTACCACCACTACCCG 
AACAAGGAAGCCTTGCTCCGCGACGTTCTCGAATGGACCCACCAGCGGCTCGCCGAGACGCTCTTCAGCATC 
GCCTACGACCCGCTGCTGACGCCCCGCGAGCGCCTGGAAAAACTCGGCCGCAAGGCCGCCCGGTTGTTCCAG 
GACGACAGCATCGGCTGCCTGATGGGCGTGGTCGCGGTCGACGCCAGCTATGGTCGCAGCGAGCTGATGGCG 
CCGATCCGCAGTTTCCTCGACGACTGGGCGCAAGCCTTCGCCCAGCTCTACCGCCCGGCCTTCGACGAGGCG 
CAGGCGCTGGAGCGCGGCCGGCAACTGGTGGCCGATTTCGAAGGCGCCATCCTGCTGGCGCGCATCTATGGC 
GAGCCGGGCTATATCGATGGCGTCACCCGGCGAGCGCTGGAGCAACTGGCGGGCTAG