ViewGene
Locus Name:
GeneID:
Location:

GeneID:4004
TrivialName: PA14_08010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08010
PAO1 Ortholog Locus:PA0616
Sequence Length:558
Protein Length:185
Start: 689063
Stop: 689620
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04005.1|AE004497_12 (AE004497) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 185/185 (100%), Positives = 185/185 (100%)
Sequence:
ATGAGCTATGTCAGTGCGGAGCATGACCGCATGCTCGCCGCGATGATCCTGCCCTGCGTGGTGGTCGCCGTG
GACCTGGCAGCGGCGCGGGTACGGGTGCGCTCCGGCGACTGGACCAGCGGCTGGCTGCGCTGGCACTCCCTG
GCAGCCGGCAAGGTTCGCCACTGGCGTGCGCCGAGCATAGGCGAACAGGGGGTACTGCTCAGTCCGTCGGGC
GGAGTGTCAATGGGTACCTTTATTCCCGGTTTGTACGGCGATGCGGGCACGGCGCCGGACAACAGCGCCAGC
AGTGAGACCTGGCGTTTCGACGACGGCGCCTCGTTGAGTTACGACTGGGCTGCGCATCGCTACCGCGTCGAG
CTGCCCAGCGGCACCGTGGAAGTGAGGGTCGGCGCCAGCGAGGTGCGGGTCAGCGACGGGGCGGTCAGTCTC
AAGGCGCCGAAGATCAGCCTGGAAGGACCGGTGGAGATCGCCGGGACACTGACGGTCAGCGGAGACATCCTC
GGCGGCGGCTCGATCATCGACACCGCCGGCAACAGCAACCACCACACCCATTGA
Translation:
MSYVSAEHDRMLAAMILPCVVVAVDLAAARVRVRSGDWTSGWLRWHSLAAGKVRHWRAPSIGEQGVLLSPSG
GVSMGTFIPGLYGDAGTAPDNSASSETWRFDDGASLSYDWAAHRYRVELPSGTVEVRVGASEVRVSDGAVSL
KAPKISLEGPVEIAGTLTVSGDILGGGSIIDTAGNSNHHTH*
AnnotationID:4011GeneID:4004
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:22
Gene Name:
Confidence Code:3
GeneProduct:putative baseplate assembly protein V
Cell Localization:()
Synonyms:gpV
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:putative tail spike protein
Functional Category Confidence Code:5
COGs:COG4540,pfam04717
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56881.1| (AE016868) baseplate assembly protein V [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 187

 Score =  245 bits (626), Expect = 8e-65
 Identities = 117/187 (62%), Positives = 139/187 (74%), Gaps = 2/187 (1%)

>gb|AAN68659.1|AE016495_11 (AE016785) pyocin R2_PP, tail spike protein [Pseudomonas putida
           KT2440]
          Length = 200

 Score =  225 bits (573), Expect = 1e-58
 Identities = 108/200 (54%), Positives = 139/200 (69%), Gaps = 15/200 (7%)








 
Structural Features:
COG4540, gpV, Phage P2 baseplate assembly protein gpV
CD-Length = 184 residues,  97.8% aligned
Score =  210 bits (536), Expect = 8e-56
Identities = 91/180 (50%), Positives = 108/180 (60%), Gaps = 5/180 (2%)

pfam04717, Phage_base_V, Phage-related baseplate assembly protein.
CD-Length = 101 residues, 100.0% aligned
Score =  142 bits (359), Expect = 2e-35
Identities = 53/101 (52%), Positives = 64/101 (63%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8010




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25153




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33893




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4004_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4004
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6241
                           PA0616_tr
                           translation of PA0616
                           185
                           99.99
                           99.99
                           0
                           964.0
     

     
     
172621
                           gb|AAG04005.1|AE004497_12
                           (AE004497) hypothetical protein PA0616 [Pseudomonas aeruginosa PAO1]
                           185
                           99.99
                           99.99
                           0
                           964.0
     

     
     
172622
                           dbj|BAA83153.1|
                           (AB030825) PRF11~similar to V genes of P2 and phiCTX: tail spike [Pseudomonas aeruginosa]
                           185
                           99.99
                           99.99
                           0
                           964.0
     

     
     
172623
                           gb|AAO56881.1|
                           (AE016868) baseplate assembly protein V [Pseudomonas syringae pv. tomato str. DC3000]
                           187
                           62.56
                           74.33
                           2
                           628.0
     

     
     
172624
                           gb|AAN68659.1|AE016495_11
                           (AE016785) pyocin R2_PP, tail spike protein [Pseudomonas putida KT2440]
                           200
                           54.00
                           69.50
                           15
                           583.0
     

     






      

          
GC ORFID: 47006How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0616Glimmer Score: 

          
Start: 6490406Stop: 6490963

          
Length: 558


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0616 translation of PA0616Homolog Bit Score 375.0

          
Other Homologs:  t_PA0616 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTATGTCAGTGCGGAGCATGACCGCATGCTCGCCGCGATGATCCTGCCCTGCGTGGTGGTCGCCGTG 
GACCTGGCAGCGGCGCGGGTACGGGTGCGCTCCGGCGACTGGACCAGCGGCTGGCTGCGCTGGCACTCCCTG 
GCAGCCGGCAAGGTTCGCCACTGGCGTGCGCCGAGCATAGGCGAACAGGGGGTACTGCTCAGTCCGTCGGGC 
GGAGTGTCAATGGGTACCTTTATTCCCGGTTTGTACGGCGATGCGGGCACGGCGCCGGACAACAGCGCCAGC 
AGTGAGACCTGGCGTTTCGACGACGGCGCCTCGTTGAGTTACGACTGGGCTGCGCATCGCTACCGCGTCGAG 
CTGCCCAGCGGCACCGTGGAAGTGAGGGTCGGCGCCAGCGAGGTGCGGGTCAGCGACGGGGCGGTCAGTCTC 
AAGGCGCCGAAGATCAGCCTGGAAGGACCGGTGGAGATCGCCGGGACACTGACGGTCAGCGGAGACATCCTC 
GGCGGCGGCTCGATCATCGACACCGCCGGCAACAGCAACCACCACACCCATTGA