ViewGene

Locus Name:
GeneID:
Location:

GeneID:4003
TrivialName: PA14_72410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72410
PAO1 Ortholog Locus:PA5486
Sequence Length:594
Protein Length:197
Start: 6450829
Stop: 6450236
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08871.1|AE004961_6 (AE004961) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGGATATGTTCGGCGTCGCCGTCCTGATCTTTCTGGTCACCGATCCCTTCGGCAACATCGCCGTGTTCCTC
GCCGCGCTGAAAGGCGTCGCCCCCGGGCGCCGCCTGCGCGTGGCGTTTCGCGAGCTGGCCTTCGCCCTGGGC
CTGCTGCTGCTCTTCCTCACCCTCGGCGAGCACATCCTCAGCGGCCTCGGCCTGTCCCGCGAGGCGACCGGG
ATCGCGGGTGGCATCATCCTGTTCGTGATCGCCATGCGCCTGATCTTCCCCTCGCCCCAAGGGCTGCTCGGC
GAAGTGCCCGACGGCGAGCCGCTGCTGGTGCCCCTGGCCACCCCGGCGGTGGCCGGGCCCTCGGCGCTGGCG
ATGCTGATCACCCTGCGCACCACCTTCGACGGTCCGCTGTGGGAGCTTTACCTGGCGGTGGTGCTGGCCTGG
GCCGCTACTGCGCTGATCCTGCTGCAGGCGGCGTTCCTCCAGCGTTTCCTCGGCCCGCGCGGGCTGACCGCC
ATCGAGCGCCTGGCCGGCATGCTGCTGATCATGCTCAGCGTCGATATGCTGTTGGACAACCTGCGCAGCGTG
TTGCACATCGCCGCCTGA
Translation:
MDMFGVAVLIFLVTDPFGNIAVFLAALKGVAPGRRLRVAFRELAFALGLLLLFLTLGEHILSGLGLSREATG
IAGGIILFVIAMRLIFPSPQGLLGEVPDGEPLLVPLATPAVAGPSALAMLITLRTTFDGPLWELYLAVVLAW
AATALILLQAAFLQRFLGPRGLTAIERLAGMLLIMLSVDMLLDNLRSVLHIAA*
AnnotationID:4010GeneID:4003
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 07:07:37
Gene Name:
Confidence Code:3
GeneProduct:putative antibiotic transporter
Cell Localization:()
Synonyms:PA5486
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2095,pfam01914
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAC61222.1| (AP005083) putative membrane protein [Vibrio parahaemolyticus]
          Length = 194

 Score =  176 bits (445), Expect = 1e-43
 Identities = 91/193 (47%), Positives = 125/193 (64%)

>emb|CAD83257.1| (BX248586) putative inner membrane protein [Candidatus Blochmannia
           floridanus]
          Length = 197

 Score =  172 bits (435), Expect = 1e-42
 Identities = 88/194 (45%), Positives = 126/194 (64%), Gaps = 1/194 (0%)

Structural Features:
COG2095, MarC, Multiple antibiotic transporter 
[Intracellular trafficking and secretion]
CD-Length = 203 residues,  97.5% aligned
Score =  127 bits (321), Expect = 8e-31
Identities = 80/198 (40%), Positives = 117/198 (59%), Gaps = 3/198 (1%)

pfam01914, MarC, MarC family integral membrane protein.
CD-Length = 203 residues,  98.0% aligned
Score =  110 bits (277), Expect = 1e-25
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 9/199 (4%)
Genomic Context:
Comment:
ReferenceID:8008
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25151
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33234
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4003_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4003

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6240 PA5486_tr translation of PA5486 197 99.99 99.99 0 962.0
172596 gb|AAG08871.1|AE004961_6 (AE004961) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 197 99.99 99.99 0 962.0
172597 gb|AAN53216.1|AE015463_13 (AE015463) conserved hypothetical protein TIGR00427 [Shewanella oneidensis MR-1] 197 48.73 67.00 0 466.0
172598 gb|AAM37521.1| (AE011907) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] 199 47.23 65.32 2 459.0
172606 emb|CAC93412.1| (AJ414159) putative membrane protein [Yersinia pestis CO92] 198 46.96 63.13 5 426.0
GC ORFID: 47005How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5486Glimmer Score:
Start: 5714518Stop: 5713925
Length: 594
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5486 translation of PA5486Homolog Bit Score 375.0
Other Homologs: t_PA5486 (ORF: GLIMMER)
GC ORF Sequence
ATGGATATGTTCGGCGTCGCCGTCCTGATCTTTCTGGTCACCGATCCCTTCGGCAACATCGCCGTGTTCCTC
GCCGCGCTGAAAGGCGTCGCCCCCGGGCGCCGCCTGCGCGTGGCGTTTCGCGAGCTGGCCTTCGCCCTGGGC
CTGCTGCTGCTCTTCCTCACCCTCGGCGAGCACATCCTCAGCGGCCTCGGCCTGTCCCGCGAGGCGACCGGG
ATCGCGGGTGGCATCATCCTGTTCGTGATCGCCATGCGCCTGATCTTCCCCTCGCCCCAAGGGCTGCTCGGC
GAAGTGCCCGACGGCGAGCCGCTGCTGGTGCCCCTGGCCACCCCGGCGGTGGCCGGGCCCTCGGCGCTGGCG
ATGCTGATCACCCTGCGCACCACCTTCGACGGTCCGCTGTGGGAGCTTTACCTGGCGGTGGTGCTGGCCTGG
GCCGCTACTGCGCTGATCCTGCTGCAGGCGGCGTTCCTCCAGCGTTTCCTCGGCCCGCGCGGGCTGACCGCC
ATCGAGCGCCTGGCCGGCATGCTGCTGATCATGCTCAGCGTCGATATGCTGTTGGACAACCTGCGCAGCGTG
TTGCACATCGCCGCCTGA