ViewGene
Locus Name:
GeneID:
Location:

GeneID:4002
TrivialName: PA14_72260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72260
PAO1 Ortholog Locus:PA5475
Sequence Length:561
Protein Length:186
Start: 6438894
Stop: 6438334
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08860.1|AE004960_3 (AE004960) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 186/186 (100%), Positives = 186/186 (100%)
Sequence:
ATGTCCAATGTACAAAATGCCAGCCGGTCTTCCGCGTTCGCGGCGGTAGAGGGCGACCATTGGGTCGAGTCC
CTCGACGATGGCCGCCACGTGCTGATCCGTCCCCTGCGCGAGGAGGACCGGGAGCGCGAACGCCAGTTCATC
AACCGGCTGTCCCCGGCGACCCGCCACTTCCGCTTCCTCGGCGAGATCAAGGAAGCCAGCCCGGCGCTGCTC
GACCAACTGATGGACATCGACTACCAGCAGAGCATGGCCTTCGTTGCCCTGGTGCACGAGGACGGTGAGCTG
CGCGAGGTCGGTATCAGCCGCTACGCCGCCTGTTGCGAGGAAGGGCAGTGCGAATGCGCGGTAACCATCGCC
GACGACTACCAGGGACTGGGCCTCGACGCCGTGCTGATGCGCCATCTGATCGACGTGGCGCGGCGCAACGGC
TTCCGCCAGATGTATTCGGTGGACTCGGCGGCCAACCGGGCGATGCGCGACCTGTGTTGCGCACTGGGCTTC
GTCGGCCAGCGCGACCCGGACGACTCGACCCAGGTCATCCACCGCCTGGCCCTGTAG
Translation:
MSNVQNASRSSAFAAVEGDHWVESLDDGRHVLIRPLREEDRERERQFINRLSPATRHFRFLGEIKEASPALL
DQLMDIDYQQSMAFVALVHEDGELREVGISRYAACCEEGQCECAVTIADDYQGLGLDAVLMRHLIDVARRNG
FRQMYSVDSAANRAMRDLCCALGFVGQRDPDDSTQVIHRLAL*
AnnotationID:4009GeneID:4002
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 06:06:38
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA5475
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68839.1|AE016516_9 (AE016786) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 189

 Score =  213 bits (542), Expect = 5e-55
 Identities = 102/175 (58%), Positives = 132/175 (75%)








 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues,  87.8% aligned
Score = 40.2 bits (94), Expect = 1e-04
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 13/85 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8006




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25149




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33229




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4002_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4002
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6239
                           PA5475_tr
                           translation of PA5475
                           186
                           99.99
                           99.99
                           0
                           963.0
     

     
     
172592
                           gb|AAG08860.1|AE004960_3
                           (AE004960) hypothetical protein PA5475 [Pseudomonas aeruginosa PAO1]
                           186
                           99.99
                           99.99
                           0
                           963.0
     

     
     
172593
                           gb|AAP30015.1|
                           (AY163849) hypothetical protein [Pseudomonas chlororaphis]
                           188
                           58.51
                           76.06
                           3
                           570.0
     

     
     
172594
                           gb|AAN68839.1|AE016516_9
                           (AE016786) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           189
                           53.96
                           70.89
                           3
                           539.0
     

     
     
172595
                           gb|AAN68896.1|AE016521_5
                           (AE016786) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           188
                           45.74
                           64.36
                           8
                           422.0
     

     






      

          
GC ORFID: 47004How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5475Glimmer Score: 

          
Start: 5702583Stop: 5702023

          
Length: 561


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5475 translation of PA5475Homolog Bit Score 375.0

          
Other Homologs:  t_PA5475 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAATGTACAAAATGCCAGCCGGTCTTCCGCGTTCGCGGCGGTAGAGGGCGACCATTGGGTCGAGTCC 
CTCGACGATGGCCGCCACGTGCTGATCCGTCCCCTGCGCGAGGAGGACCGGGAGCGCGAACGCCAGTTCATC 
AACCGGCTGTCCCCGGCGACCCGCCACTTCCGCTTCCTCGGCGAGATCAAGGAAGCCAGCCCGGCGCTGCTC 
GACCAACTGATGGACATCGACTACCAGCAGAGCATGGCCTTCGTTGCCCTGGTGCACGAGGACGGTGAGCTG 
CGCGAGGTCGGTATCAGCCGCTACGCCGCCTGTTGCGAGGAAGGGCAGTGCGAATGCGCGGTAACCATCGCC 
GACGACTACCAGGGACTGGGCCTCGACGCCGTGCTGATGCGCCATCTGATCGACGTGGCGCGGCGCAACGGC 
TTCCGCCAGATGTATTCGGTGGACTCGGCGGCCAACCGGGCGATGCGCGACCTGTGTTGCGCACTGGGCTTC 
GTCGGCCAGCGCGACCCGGACGACTCGACCCAGGTCATCCACCGCCTGGCCCTGTAG