ViewGene
Locus Name:
GeneID:
Location:

GeneID:4001
TrivialName: PA14_61260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61260
PAO1 Ortholog Locus:PA4629
Sequence Length:579
Protein Length:192
Start: 5469165
Stop: 5469743
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08017.1|AE004877_4 (AE004877) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 192/192 (100%), Positives = 192/192 (100%)
Sequence:
ATGGAATCGCTGTTCGTCCCCACCCTGATCGTTGCCCTCGCGGAAATCGGCGACAAGACCCAGTTGCTGGCA
CTCCTGCTCGCGGCGCGTTTCCGCAAGCCGTGGCCGATCATCGCCGGCATCGTCGCCGCCACCCTGGCCAAC
CATTTCGCTGCCGGCGCGGTGGGCGCCTGGGTCGCCAGCTTCTTCTCGGAAGCCACCCTCAGCTGGATCCTC
GCCGCCTCCTTCATCGCCGTCGCCCTGTGGACGCTGGTACCGGACAAGCTCGACGACGAAGAGTCCGGACTG
AAGAAATACGGCCCCTTCCTCACCACCCTGATCGCGTTCTTCCTCGCCGAGATGGGCGACAAGACCCAGGTC
GCCACGGTCATGCTGGCCGCCCAGTATCCGCATTTCTGGCTGGTGGTGATCGGCACCACCCTGGGCATGCTG
ATCGCCAACGTACCGGTGGTACTGATCGGCAACCTGGCCGCCGATAAGCTGCCGCTGACCCTGATCCGCCGC
CTGGCCGCGGCCGCCTTCGCCGCACTTGGCCTGTACGCCGCCTGGCACGCCGCGCAATTGACCGGCTGGCTC
TGA
Translation:
MESLFVPTLIVALAEIGDKTQLLALLLAARFRKPWPIIAGIVAATLANHFAAGAVGAWVASFFSEATLSWIL
AASFIAVALWTLVPDKLDDEESGLKKYGPFLTTLIAFFLAEMGDKTQVATVMLAAQYPHFWLVVIGTTLGML
IANVPVVLIGNLAADKLPLTLIRRLAAAAFAALGLYAAWHAAQLTGWL*
AnnotationID:4008GeneID:4001
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 13:01:21
Gene Name:
Confidence Code:4
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4629
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2119
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD15807.1| (AL646068) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 204

 Score =  207 bits (526), Expect = 4e-53

>gb|AAO09478.1|AE016800_83 (AE016800) Predicted membrane protein [Vibrio vulnificus CMCP6]
          Length = 184

 Score =  201 bits (510), Expect = 3e-51
 Identities = 108/183 (59%), Positives = 133/183 (72%), Gaps = 2/183 (1%)







 
Structural Features:
COG2119, Predicted membrane protein 
CD-Length = 190 residues, 100.0% aligned
Score =  170 bits (433), Expect = 8e-44
Identities = 96/191 (50%), Positives = 119/191 (62%), Gaps = 2/191 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8004




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25147




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38122




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4001_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4001
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6238
                           PA4629_tr
                           translation of PA4629
                           192
                           99.99
                           99.99
                           0
                           964.0
     

     
     
172580
                           gb|AAG08017.1|AE004877_4
                           (AE004877) hypothetical protein PA4629 [Pseudomonas aeruginosa PAO1]
                           192
                           99.99
                           99.99
                           0
                           964.0
     

     
     
172581
                           gb|AAN66385.1|AE016266_7
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           194
                           77.31
                           87.11
                           2
                           771.0
     

     
     
172582
                           gb|AAO54674.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           194
                           75.77
                           86.08
                           2
                           757.0
     

     
     
172586
                           gb|AAO09478.1|AE016800_83
                           (AE016800) Predicted membrane protein [Vibrio vulnificus CMCP6]
                           194
                           56.18
                           69.07
                           12
                           513.0
     

     






      

          
GC ORFID: 47003How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4629Glimmer Score: 

          
Start: 4732845Stop: 4733423

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4629 translation of PA4629Homolog Bit Score 375.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5061 (ORF: BLASTX 290.0), t_PA4629 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAATCGCTGTTCGTCCCCACCCTGATCGTTGCCCTCGCGGAAATCGGCGACAAGACCCAGTTGCTGGCA 
CTCCTGCTCGCGGCGCGTTTCCGCAAGCCGTGGCCGATCATCGCCGGCATCGTCGCCGCCACCCTGGCCAAC 
CATTTCGCTGCCGGCGCGGTGGGCGCCTGGGTCGCCAGCTTCTTCTCGGAAGCCACCCTCAGCTGGATCCTC 
GCCGCCTCCTTCATCGCCGTCGCCCTGTGGACGCTGGTACCGGACAAGCTCGACGACGAAGAGTCCGGACTG 
AAGAAATACGGCCCCTTCCTCACCACCCTGATCGCGTTCTTCCTCGCCGAGATGGGCGACAAGACCCAGGTC 
GCCACGGTCATGCTGGCCGCCCAGTATCCGCATTTCTGGCTGGTGGTGATCGGCACCACCCTGGGCATGCTG 
ATCGCCAACGTACCGGTGGTACTGATCGGCAACCTGGCCGCCGATAAGCTGCCGCTGACCCTGATCCGCCGC 
CTGGCCGCGGCCGCCTTCGCCGCACTTGGCCTGTACGCCGCCTGGCACGCCGCGCAATTGACCGGCTGGCTC 
TGA