ViewGene
Locus Name:
GeneID:
Location:

GeneID:4000
TrivialName: PA14_07580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07580
PAO1 Ortholog Locus:PA0581
Sequence Length:570
Protein Length:189
Start: 653809
Stop: 653240
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03970.1|AE004494_6 (AE004494) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 189/189 (100%), Positives = 189/189 (100%)
Sequence:
ATGGTCTGGCTACTGGCGATCCTCGCCTACCTGCTCGGTTCCCTCTCCTTCGCCGTCCTGCTCAGCCGCTGG
TTCGGCACCCAGGACCCGCGCGCCAGCGGTTCCGGCAACCCCGGCGCGACCAACATGCTGCGCGTCGCCGGG
AAGAAACTCGCCATCCTGACCCTGCTCGGCGACGTCGGCAAAGGCCTGCTGCCGGTGCTGGTCGCCCGCTGG
CTGGGGCTCGGCGTGATGGAGGAGGCCTGGGTCGGCATCGCCGCCGTGATCGGCCACCTGTACCCGCTGTAC
TTCAACTTCCGCGGCGGCAAGGGTGTCGCCACCGCCGCGGGCATGCTCCTCGGCCTCTATCCGCCGGCCGTA
CTGCTGGCCGCGGCGGCCTGGCTGCTGACCTTCAAGCTGTCGCGCACCAGCTCGCTCGCCTCGCTGGTGGCC
ACCCCGCTGACCCTGCCGTTGCTGGCCTGGCAGCAGCCCGGAGCGCTGCTGCCGATGACCGTGCTGACCGGC
CTGATCGTCTGGCGGCACCGCGCCAACTTACGCGATCTGTTCGCCGGCCGCGAACGGCATTTCTAA
Translation:
MVWLLAILAYLLGSLSFAVLLSRWFGTQDPRASGSGNPGATNMLRVAGKKLAILTLLGDVGKGLLPVLVARW
LGLGVMEEAWVGIAAVIGHLYPLYFNFRGGKGVATAAGMLLGLYPPAVLLAAAAWLLTFKLSRTSSLASLVA
TPLTLPLLAWQQPGALLPMTVLTGLIVWRHRANLRDLFAGRERHF*
AnnotationID:4007GeneID:4000
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 08:08:07
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane protein
Cell Localization:()
Synonyms:PA0581
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0344
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16253.1| (AL646070) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 207

 Score =  154 bits (390), Expect = 2e-37
 Identities = 98/192 (51%), Positives = 121/192 (63%), Gaps = 12/192 (6%)






 
Structural Features:
COG0344, Predicted membrane protein
D-Length = 200 residues,  98.0% aligned
Score =  173 bits (440), Expect = 1e-44
Identities = 96/196 (48%), Positives = 127/196 (64%), Gaps = 7/196 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8002




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25145




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33834




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4000_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4000
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6237
                           PA0581_tr
                           translation of PA0581
                           189
                           99.99
                           99.99
                           0
                           966.0
     

     
     
172528
                           gb|AAG03970.1|AE004494_6
                           (AE004494) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           189
                           99.99
                           99.99
                           0
                           966.0
     

     
     
172529
                           gb|AAN66022.1|AE016231_5
                           (AE016775) conserved hypothetical protein TIGR00023 [Pseudomonas putida KT2440]
                           189
                           76.19
                           88.35
                           0
                           742.0
     

     
     
172530
                           gb|AAO54083.1|
                           (AE016857) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           192
                           74.47
                           84.89
                           3
                           741.0
     

     
     
172534
                           emb|CAD16253.1|
                           (AL646070) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           210
                           46.66
                           57.61
                           24
                           397.0
     

     






      

          
GC ORFID: 47002How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0581Glimmer Score: 

          
Start: 6455152Stop: 6454583

          
Length: 570


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0581 translation of PA0581Homolog Bit Score 376.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6765 (ORF: BLASTX 288.0), t_PA0581 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCTGGCTACTGGCGATCCTCGCCTACCTGCTCGGTTCCCTCTCCTTCGCCGTCCTGCTCAGCCGCTGG 
TTCGGCACCCAGGACCCGCGCGCCAGCGGTTCCGGCAACCCCGGCGCGACCAACATGCTGCGCGTCGCCGGG 
AAGAAACTCGCCATCCTGACCCTGCTCGGCGACGTCGGCAAAGGCCTGCTGCCGGTGCTGGTCGCCCGCTGG 
CTGGGGCTCGGCGTGATGGAGGAGGCCTGGGTCGGCATCGCCGCCGTGATCGGCCACCTGTACCCGCTGTAC 
TTCAACTTCCGCGGCGGCAAGGGTGTCGCCACCGCCGCGGGCATGCTCCTCGGCCTCTATCCGCCGGCCGTA 
CTGCTGGCCGCGGCGGCCTGGCTGCTGACCTTCAAGCTGTCGCGCACCAGCTCGCTCGCCTCGCTGGTGGCC 
ACCCCGCTGACCCTGCCGTTGCTGGCCTGGCAGCAGCCCGGAGCGCTGCTGCCGATGACCGTGCTGACCGGC 
CTGATCGTCTGGCGGCACCGCGCCAACTTACGCGATCTGTTCGCCGGCCGCGAACGGCATTTCTAA