ViewGene
Locus Name:
GeneID:
Location:

GeneID:400
TrivialName: PA14_11830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11830
PAO1 Ortholog Locus:PA4021
Sequence Length:1932
Protein Length:643
Start: 1024317
Stop: 1026248
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07408.1|AE004819_1 (AE004819) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 640/643 (99%), Positives = 640/643 (99%)
Sequence:
ATGCCTGCCAGTTCCATGAGCCGCCACGCGCGGCAAGTGCTGACCGTCGCCCAGGGCAAGATCCCGCCGGGC
GGCCCTGCGACCGATCCGTCCATCGCCCGCTCCTGGCTGCGCTGCCTGGAACAGCACCATCTCGATCCCGGC
CAGCCGATGGCGCCGATGGTGCTGGAGCACGCGCGCATGCTCGAACGCCGCGAGCGCCTGCAACAGGTGCTG
GAGATCGCCGATGGCGAGATGCACAGCCTCTACCAGCAGCTTTCCGGCAACGACCATGCGGTACTGCTCACC
GATGCCCGCGGGGTGATCCTCAATTGCGTCAACGCCGACGCCCAGCGCCAGACCTTCGAACACGCCGGCCTC
TGGCTCGGCGCCGACTGGAGCGAGCCCTGCGAAGGCACCAACGGCATCGGCACCTGCGTGGTCGAGCGGCAG
GCCCTGACCATCCAGCAGGAAGAGCACTTCCGTAGCCGCCACACCGGCCTGACCTGCTCGGCGAGCCCGGTG
TTCGATCCGCAGGGCGAGCTGATGGCGGTGCTCGACGTGTCTTCGGCGCGCCAGGAAGTCTCGCGGCAGAGC
CAGTTCCACACCATGGCGCTGGTCAACCTGTCGGCGAAGATCATCGAGGGCTGCTATTTCCTCCGTCGCTTC
GAGGGCTCCTGGCTGCTGCGCTTCCATGTCCAGGGCGACTATGTCGGCCTGTTCAGCGAAGGGCTGCTGGCC
TTCGAGGAAGACGGGCGGATCCGCGCGGTGAACCAGAGCGCGCTGAACCTGCTCGGTTGTCCGCGCCAGCGC
CTGCTCGGCCAGCCGGTGGAGACCTTCTTCGATTGCCGTCTCGACGACCTGCTCGGTCGCGCCTCGCCGCAA
CCCAGCGCCAGCTGGCCGCTGCGCACCCGCGAGGGACGGACCCTGTACGCCATGCTGCGCGGCGCGCCGCGG
GCGATACCCCAGGGCCTGGCGGTGCCCACGGCAGCGAAGCCGGCGCCTGCCGCGCCCGGCCTGTGCCTGGGC
GACGCCGAGCTGGCCGCCGATTTCCGCCGGGCGCTGAAGGTCTACGCGCGCGACGTGCCGCTGCTGCTCAAC
GGCGAGACCGGTTCCGGCAAGGAGGCCTTCGCCAAGGCCGTGCACCTGGCCGGCCCGCGCGCGGAACAGGCG
TTCGTCGCGCTGAACTGCGCGGCGATCCCGGAAACCCTGATCGAGAGCGAACTGTTCGGTTATCGCGGCGGC
AGCTTCACCGGCGCGCGCAAGGAGGGCATGCGCGGCAAGTTGCAGCAGGCCGACGGCGGCACCCTGTTCCTC
GACGAGATCGGCGACATGCCGCTGGCCTTGCAGACCCGCCTGCTGCGGGTGCTGGAAGAGCGCCGGGTAGTA
CCGCTGGGCGGCGAGCCAGAGGATGTCGACGTGCGCCTGATCAGCGCTACCCACCGCGACCTGGCCGGGCTG
GTCGCCGACGGACGCTTCCGCGAGGATCTCTACTACCGCCTCAATGGCATGGTCGTGAGCCTGCCGCCGCTG
CGCGAGCGCAGCGACCGCGAGGAGCTGCTGGACTACCTGCTGGCCGAGGAAGCCAGGGGCCAGCGCATCCAG
CTCGACGGCGAGGTTCGCCAGGGCCTGCTGGCCTACCGCTGGCCGGGCAACGTCCGGCAGATGCGCACGGTG
CTACGGACCCTGGTGGCACTCTGCGAGGACGGCCGGGTCGGCCTGCGCGACCTGCCCGCGGATATCCGCCAG
GCCCTGGCGGCGCTGCCGCCCGCCGCAGCGGCGCCCGCCCCGGCCGCGAGCAACAGCCTGGACGACGCCGAG
CGAGCCGCGTTGCTGGCGGCGCTGGATGGCCAGCGCTGGCACGTGAGCCGGGTGGCCGAGCAACTGGGGATC
AGCCGCAACACCCTGTATCGCAAGCTGCGCCGGCACGGCCTGGTGCGCGGCCAGGCCTGA
Translation:
MPASSMSRHARQVLTVAQGKIPPGGPATDPSIARSWLRCLEQHHLDPGQPMAPMVLEHARMLERRERLQQVL
EIADGEMHSLYQQLSGNDHAVLLTDARGVILNCVNADAQRQTFEHAGLWLGADWSEPCEGTNGIGTCVVERQ
ALTIQQEEHFRSRHTGLTCSASPVFDPQGELMAVLDVSSARQEVSRQSQFHTMALVNLSAKIIEGCYFLRRF
EGSWLLRFHVQGDYVGLFSEGLLAFEEDGRIRAVNQSALNLLGCPRQRLLGQPVETFFDCRLDDLLGRASPQ
PSASWPLRTREGRTLYAMLRGAPRAIPQGLAVPTAAKPAPAAPGLCLGDAELAADFRRALKVYARDVPLLLN
GETGSGKEAFAKAVHLAGPRAEQAFVALNCAAIPETLIESELFGYRGGSFTGARKEGMRGKLQQADGGTLFL
DEIGDMPLALQTRLLRVLEERRVVPLGGEPEDVDVRLISATHRDLAGLVADGRFREDLYYRLNGMVVSLPPL
RERSDREELLDYLLAEEARGQRIQLDGEVRQGLLAYRWPGNVRQMRTVLRTLVALCEDGRVGLRDLPADIRQ
ALAALPPAAAAPAPAASNSLDDAERAALLAALDGQRWHVSRVAEQLGISRNTLYRKLRRHGLVRGQA*
AnnotationID:409GeneID:400
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 15:03:03
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA4021
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3284,COG3829,COG2204
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAA21743.1| (L31844) putative [Clostridium magnum]
Length = 651
Score =  263 bits (671), Expect = 3e-69
Identities = 180/641 (28%), Positives = 316/641 (49%), Gaps = 59/641 (9%)


gb|AAG07534.1|AE004831_6 (AE004831) transcriptional regulator AcoR [Pseudomonas aeruginosa PAO1]
Length = 625
Score =  471 bits (1212), Expect = e-132
Identities = 297/627 (47%), Positives = 374/627 (59%), Gaps = 33/627 (5%)






 
Structural Features:
gnl|CDD|12619 COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism
[Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Length = 606
Score =  702 bits (1814), Expect = 0.0
Identities = 325/640 (50%), Positives = 405/640 (63%), Gaps = 35/640 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:803




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17945




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34290




  
Author/Investigator(s):
        Kruger N, Oppermann FB, Lorenzl H, Steinbuchel A.





  
Title:
        Biochemical and molecular characterization of the Clostridium magnum acetoin dehydrogenase enzyme system.




  
PubMed:
        8206840


MedLine:
        




    
Source:
J Bacteriol. 1994 Jun;176(12):3614-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8206840&itool=iconpmc









           
Homologs By Global Alignment 

           

       



     
Gene ID:400
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
666
                           PA4021_tr
                           translation of PA4021
                           643
                           99.53
                           99.53
                           0
                           3291.0
     

     
     
30732
                           gb|AAG07408.1|AE004819_1
                           (AE004819) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           643
                           99.53
                           99.53
                           0
                           3291.0
     

     
     
30734
                           emb|CAD16838.1|
                           (AL646073) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           650
                           67.07
                           76.76
                           20
                           2159.0
     

     
     
30733
                           gb|AAN66173.1|AE016245_2
                           (AE016776) sigma-54 dependent transcriptional regulator [Pseudomonas putida KT2440]
                           735
                           60.13
                           69.52
                           102
                           2185.0
     

     
     
667
                           PA4147_tr
                           translation of PA4147
                           658
                           46.04
                           58.51
                           48
                           1247.0
     

     






      

          
GC ORFID: 43402How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4021Glimmer Score: 

          
Start: 3929620Stop: 3927689

          
Length: 1932


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4021 translation of PA4021Homolog Bit Score 1272.0

          
Other Homologs:  t_PA4147 (ORF: BLASTX 471.0), t_PA1663 (ORF: BLASTX 228.0), t_PA4547 (ORF: BLASTX 225.0), t_PA2005 (ORF: BLASTX 224.0), t_PA1945 (ORF: BLASTX 212.0), psyr_15may02_Scaffold2_revised_gene4053 (ORF: BLASTX 209.0), t_PA5125 (ORF: BLASTX 208.0), t_PA5483 (ORF: BLASTX 208.0), t_PA1196 (ORF: BLASTX 207.0), t_PA4726 (ORF: BLASTX 205.0), t_PA1097 (ORF: BLASTX 204.0), t_PA0873 (ORF: BLASTX 204.0), t_PA2449 (ORF: BLASTX 203.0), t_PA2665 (ORF: BLASTX 198.0), t_PA5511 (ORF: BLASTX 190.0), psyr_15may02_Scaffold14_revised_gene2286 (ORF: BLASTX 187.0), t_PA5166 (ORF: BLASTX 186.0), t_PA3932 (ORF: BLASTX 137.0), t_PA4021 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGCCAGTTCCATGAGCCGCCACGCGCGGCAAGTGCTGACCGTCGCCCAGGGCAAGATCCCGCCGGGC 
GGCCCTGCGACCGATCCGTCCATCGCCCGCTCCTGGCTGCGCTGCCTGGAACAGCACCATCTCGATCCCGGC 
CAGCCGATGGCGCCGATGGTGCTGGAGCACGCGCGCATGCTCGAACGCCGCGAGCGCCTGCAACAGGTGCTG 
GAGATCGCCGATGGCGAGATGCACAGCCTCTACCAGCAGCTTTCCGGCAACGACCATGCGGTACTGCTCACC 
GATGCCCGCGGGGTGATCCTCAATTGCGTCAACGCCGACGCCCAGCGCCAGACCTTCGAACACGCCGGCCTC 
TGGCTCGGCGCCGACTGGAGCGAGCCCTGCGAAGGCACCAACGGCATCGGCACCTGCGTGGTCGAGCGGCAG 
GCCCTGACCATCCAGCAGGAAGAGCACTTCCGTAGCCGCCACACCGGCCTGACCTGCTCGGCGAGCCCGGTG 
TTCGATCCGCAGGGCGAGCTGATGGCGGTGCTCGACGTGTCTTCGGCGCGCCAGGAAGTCTCGCGGCAGAGC 
CAGTTCCACACCATGGCGCTGGTCAACCTGTCGGCGAAGATCATCGAGGGCTGCTATTTCCTCCGTCGCTTC 
GAGGGCTCCTGGCTGCTGCGCTTCCATGTCCAGGGCGACTATGTCGGCCTGTTCAGCGAAGGGCTGCTGGCC 
TTCGAGGAAGACGGGCGGATCCGCGCGGTGAACCAGAGCGCGCTGAACCTGCTCGGTTGTCCGCGCCAGCGC 
CTGCTCGGCCAGCCGGTGGAGACCTTCTTCGATTGCCGTCTCGACGACCTGCTCGGTCGCGCCTCGCCGCAA 
CCCAGCGCCAGCTGGCCGCTGCGCACCCGCGAGGGACGGACCCTGTACGCCATGCTGCGCGGCGCGCCGCGG 
GCGATACCCCAGGGCCTGGCGGTGCCCACGGCAGCGAAGCCGGCGCCTGCCGCGCCCGGCCTGTGCCTGGGC 
GACGCCGAGCTGGCCGCCGATTTCCGCCGGGCGCTGAAGGTCTACGCGCGCGACGTGCCGCTGCTGCTCAAC 
GGCGAGACCGGTTCCGGCAAGGAGGCCTTCGCCAAGGCCGTGCACCTGGCCGGCCCGCGCGCGGAACAGGCG 
TTCGTCGCGCTGAACTGCGCGGCGATCCCGGAAACCCTGATCGAGAGCGAACTGTTCGGTTATCGCGGCGGC 
AGCTTCACCGGCGCGCGCAAGGAGGGCATGCGCGGCAAGTTGCAGCAGGCCGACGGCGGCACCCTGTTCCTC 
GACGAGATCGGCGACATGCCGCTGGCCTTGCAGACCCGCCTGCTGCGGGTGCTGGAAGAGCGCCGGGTAGTA 
CCGCTGGGCGGCGAGCCAGAGGATGTCGACGTGCGCCTGATCAGCGCTACCCACCGCGACCTGGCCGGGCTG 
GTCGCCGACGGACGCTTCCGCGAGGATCTCTACTACCGCCTCAATGGCATGGTCGTGAGCCTGCCGCCGCTG 
CGCGAGCGCAGCGACCGCGAGGAGCTGCTGGACTACCTGCTGGCCGAGGAAGCCAGGGGCCAGCGCATCCAG 
CTCGACGGCGAGGTTCGCCAGGGCCTGCTGGCCTACCGCTGGCCGGGCAACGTCCGGCAGATGCGCACGGTG 
CTACGGACCCTGGTGGCACTCTGCGAGGACGGCCGGGTCGGCCTGCGCGACCTGCCCGCGGATATCCGCCAG 
GCCCTGGCGGCGCTGCCGCCCGCCGCAGCGGCGCCCGCCCCGGCCGCGAGCAACAGCCTGGACGACGCCGAG 
CGAGCCGCGTTGCTGGCGGCGCTGGATGGCCAGCGCTGGCACGTGAGCCGGGTGGCCGAGCAACTGGGGATC 
AGCCGCAACACCCTGTATCGCAAGCTGCGCCGGCACGGCCTGGTGCGCGGCCAGGCCTGA