ViewGene

Locus Name:
GeneID:
Location:

GeneID:40
TrivialName: PA14_55650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55650
PAO1 Ortholog Locus:PA4282
Sequence Length:3636
Protein Length:1211
Start: 4959088
Stop: 4962723
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07670.1|AE004844_2 (AE004844) probable exonuclease [Pseudomonas aeruginosa PAO1]
Identities = 1190/1211 (98%), Positives = 1197/1211 (98%)
Sequence:
ATGAAGATTCTCGCCATCCGCCTGAAGAACCTCGCCTCCCTCGCTGGCGAGCAGGAAATCGACTTCACCCGC
GAACCGCTGTCCAGCGCCGGCCTGTTCGCCATCACCGGCCCGACCGGCGCCGGCAAGAGCACCGTGCTGGAC
GCCCTGTGCCTGGCCCTGTTCGGCAGCACGCCGCGGCTGGAAAGCACTTCGGCCAGCAGCAAGGTTCCCGAT
GGCCGGAACGAGCTGTCCAGCAACGACGAACGCAACCTGCTGCGCCGCGGTTGCGCCAACGGCTACGCCGAA
GTGGATTTCGTCGGCATCGACGGCCACCGCTATCGCGCCCGCTGGGAAACCCGGCGCTCCCGGGACAAGGCG
GACGGCGCCTTGCAAAAGAGCCAGCAGAGCCTCCAGGACCTGGAGACCCAGCAAATGCTGGCAGCGAACAAG
AAAAGCGAGTTCCGCGAACAGCTGGAGCAGAAGCTCGGCCTCAATTTCGCCCAGTTCACTCGCGCCGTGCTG
CTGGCCCAGAGCGAATTCAGCGCCTTCCTCAAGGCCAGCGACAACGACCGCGGCGCATTGCTGGAGAAACTC
ACCGACACCGGCCTGTACAGCCAATTGAGCAAAGCCGCCTACCAGCGCGCCAGCCAGGCCGACGAGCAGCGC
AAGCAACTCGAGCAACGCCTGGAAGGCAGCCTGCCCCTGGCCGAGCAGGCCCGGGCCGGGCTCGAGGCGGCG
CTGGAATCCCACGCCCAGGCGCGTCTCCAGGAGCAACAGGCCCTGCAGCGCCTGGAAGGCCAGCAACAATGG
TTCACCGAGGAGCAGCGGCTGCTGCAATCCTGCGAGCACGCACAAGGCCAACTGGCCGAGGCCAGGCAGGCC
TGGGACGCCCTGGCGACGGAGCGGGAAACCCTGCAATGGCTGGAGCGCCTGGCTCCGGTTCGCGGACTGATC
GAACGCCTGAAGCAACTCGAGCAGGAACTCCGGCACTCCGAGCAGCAGCAGCGGCAGCGCACCGAGCAGCAA
GCCGCGGGCGCCGAGCGCTTGCAAGGATTGCAGGCCCGCGTGCAGGAGGCGCGCGAGCGCCAGGCCCAGGCC
GACGACCATCTGCGTCAGGCCCAGGCGCCGTTGCGCGAGGCTTTCCAGCTGGAGAGCGAGGCCAGGCGCCTG
GAGCGAACGCTGGCCGAGCGACAGGCACTCCATCGGCAATCGAACCAGCGCCACGCCCAGCAAAGCGACGCC
GCTCGGCAACTGGATATGGAGCAGCAGCGCCATGTCGCGGAACAGGCGCAACTGCAGGCGGCATTGCGCGAC
AGCCAGGCTCTCGCCGCGCTCGGCGACGCCTGGGCGACCCACCAGGGCCAGCTCGCCGCCTTCGTGCAACGT
CGCCAGCGCGCGCTCGAAAGCCAGGCGCAGCTCCCCGAGCTGGAAAAATCCCTGGCCCAGGCCGGGGAACCG
CTCGAACGCTTGCAGGCGCAATGGACCGCCCTCCATGGCAGCGAGCCGGACGACCTGGCGGCACGCCTGGAC
GAATTGCGCCGGCAGACCGATAGCCTGGAACGACAACAAGCGCTCCACAAGGAATGGCAACAGGCCCTCGAC
CAACGCACCGGCCTGGCTCGACGCCTGGGCGAACTCGACCAGCGTATGGTCGAGCAGGAGCAGGCATTGCTC
GACCTGAAACGACAAGGCAGCCAATACGCCGAGGAGGTGAAGGCGGCGGAGCAGGCCCTGGAGGTCACCCGC
GAGTTGCTCCAACGCCAACGTCTGGCCCGCAGCGCCAGCGTCGAGCAACTGCGCGCCGGCCTGGTGGACGGC
GAGGCCTGCCCGGTCTGCGGCAGCCAGGAGCATCCCTATCACCATTCCGAGCAACTGCTCGCCGCCCTCGGT
GAACACGACGACCAGGAGCAGGTCCGCGCCGAGCAGTCCCTCGAGCGGCTGCGACAGACCCTGGTCGGTCTG
CGCGAGGGCTATTCCAGCCAGCGGGAAAGACTCAACCAGAGTCGCCAGGAGCAGCAGGAACTGACCGGCCAC
CTAGCCGCGCTCGATCGGCAACTGGAGCAATGGACGCTGCCGGAAGAACTGCGACTCCTGCAGCCGTCCGCG
CAGTTGGAGTGGCTGGCACAACGCCTGGACGACCTGGCAGGGCAGCGCCAGCAGCGCCAACGAGACTTCGAC
CGGCTGATCGCCCGCCAGCGCCAGACCCAGCAATTGCAGCAGGAACTGCGGGCCGCCGAGACGAGCCTGCAA
CAGCGCCAGCAGGCGCTGACGGAACAACGGCAGCGCTACGAACATTTGCAGCAGCAGGTCGAGGAGGACAGC
CAGCAATTGCGTCCATTGCTCTCCGACGAGCACTGGCAGCGCTGGCAGGCAGATCCGCTGCGGACTTTCCAG
GCCCTCGGCGAGTCCATCGAGCAACGCCGGCAGCAACAGGCGCGGCTTCAGCAGGTCGAACAGCGTCTGCAG
GAGCTCAAGCAGCGCTGCGATGAATCAAGCTGGCAACTGAAGCAAAGCGACGAGCAACGCAACGAAGCCCGC
CAGGCAGAGGAAAGGGTCCAGGCGGAACTCGCCGAGCTGAACGGACGCCTCGGCGCTCACCTGGGCCAGCAC
GCCTGCGCCCAGGACTGGCAACTATCGCTGGAGCACGCCGCGCAAGCGGCGCAGAGCGCTGTCGAGACGCTC
CAGGCGCCCCTGGATTCGCTGCGCGAGGAACAACTGCGACTCGCCGAAGCCCTGGAACACCTGCAGCAGCAA
CGGCAGCGCCAACAGGATGAGTTCCAGCGCCTGCAGGCCGACTGGCAGGCCTGGCGCGAACGCCAGGACAAC
CTCGACGACAGCCGCCTCGACGCCCTGCTCGGCCTTTCCGAGGAACAGGCGACGCAATGGCGGGAGCAATTG
CAGCGACTGCAAGAGGAGATCACCCGCCAGCAGACGCTGGAAGCGGAGCGCCAGGCGCAACTGCTCCAGCAT
CGCCGGCAGCGGCCGGAAACCGACCGCGAGGCGCTGGAAGACAACCTGCGGCAACAGCGCGAACGCCTGGCC
ACCAGCGAACAGGCCTACCTGGATACCTACAGCCAGTTGCAGGCCGACAACCAGCGCCGCGAGCAGAGCCAG
GCGCTGCTTGCCGAGCTGGAGCGAGCCCGCGCCGAGTTCCGTAGATGGGGCCGCCTGAACGAACTGATCGGT
TCGTCCAGCGGCGACAAGTTCCGCCGCATCGCCCAGGGCTACAACCTCGACCTGCTGGTGCAGCACAGCAAC
GTGCAGTTGCGCCAGTTGGCGCGGCGCTACCGCCTGCAGCGCGGCGGCAGCGAACTGGGCCTACTGGTGGTG
GACACCGAGATGGGCGACGAACTGCGCTCGGTGTATTCGCTCTCCGGCGGCGAGACCTTCCTGATTTCCCTG
GCCCTGGCGCTCGGCCTGGCCTCGATGGCATCGAGCAAGCTGCGCATCGAGTCGCTGTTCATCGACGAAGGC
TTCGGCAGCCTCGACCCGGAATCCCTGCAACTGGCGATGGATGCCCTGGACAACCTGCAGGCCCAGGGGCGC
AAGGTGGCGGTGATTTCCCACGTCCAGGAAATGCACGAACGGATCCCGGTCCAGGTGCGGGTCCAGCGCGAG
GGCAACGGCATGAGCAGCCTGAAGGTGGTCGGCTGA
Translation:
MKILAIRLKNLASLAGEQEIDFTREPLSSAGLFAITGPTGAGKSTVLDALCLALFGSTPRLESTSASSKVPD
GRNELSSNDERNLLRRGCANGYAEVDFVGIDGHRYRARWETRRSRDKADGALQKSQQSLQDLETQQMLAANK
KSEFREQLEQKLGLNFAQFTRAVLLAQSEFSAFLKASDNDRGALLEKLTDTGLYSQLSKAAYQRASQADEQR
KQLEQRLEGSLPLAEQARAGLEAALESHAQARLQEQQALQRLEGQQQWFTEEQRLLQSCEHAQGQLAEARQA
WDALATERETLQWLERLAPVRGLIERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQA
DDHLRQAQAPLREAFQLESEARRLERTLAERQALHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRD
SQALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWTALHGSEPDDLAARLD
ELRRQTDSLERQQALHKEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQYAEEVKAAEQALEVTR
ELLQRQRLARSASVEQLRAGLVDGEACPVCGSQEHPYHHSEQLLAALGEHDDQEQVRAEQSLERLRQTLVGL
REGYSSQRERLNQSRQEQQELTGHLAALDRQLEQWTLPEELRLLQPSAQLEWLAQRLDDLAGQRQQRQRDFD
RLIARQRQTQQLQQELRAAETSLQQRQQALTEQRQRYEHLQQQVEEDSQQLRPLLSDEHWQRWQADPLRTFQ
ALGESIEQRRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQH
ACAQDWQLSLEHAAQAAQSAVETLQAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDN
LDDSRLDALLGLSEEQATQWREQLQRLQEEITRQQTLEAERQAQLLQHRRQRPETDREALEDNLRQQRERLA
TSEQAYLDTYSQLQADNQRREQSQALLAELERARAEFRRWGRLNELIGSSSGDKFRRIAQGYNLDLLVQHSN
VQLRQLARRYRLQRGGSELGLLVVDTEMGDELRSVYSLSGGETFLISLALALGLASMASSKLRIESLFIDEG
FGSLDPESLQLAMDALDNLQAQGRKVAVISHVQEMHERIPVQVRVQREGNGMSSLKVVG*
AnnotationID:50GeneID:40
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 18:06:42
Gene Name:sbcC
Confidence Code:2
GeneProduct:putative exonuclease
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0419
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67638.1|AE016393_7 (AE016781) exonuclease SbcC [Pseudomonas putida KT2440]
          Length = 1214

 Score =  946 bits (2446), Expect = 0.0
 Identities = 572/1236 (46%), Positives = 777/1236 (62%), Gaps = 47/1236 (3%)

>gb|AAO57235.1| (AE016869) exonuclease SbcC [Pseudomonas syringae pv. tomato str.
            DC3000]
          Length = 1214

 Score =  882 bits (2279), Expect = 0.0
 Identities = 531/1222 (43%), Positives = 736/1222 (60%), Gaps = 23/1222 (1%)
Structural Features:
COG0419, SbcC, ATPase involved in DNA repair 
[DNA replication, recombination, and repair]
CD-Length = 908 residues,  84.6% aligned
Score =  145 bits (366), Expect = 3e-35
Identities = 176/785 (22%), Positives = 321/785 (40%), Gaps = 36/785 (4%)

Genomic Context:
Comment:
ReferenceID:83
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17225
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36645
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:40_cdd.html
URL:
ReferenceID:36790
Author/Investigator(s): Leach DR, Lloyd RG, Coulson AF.
Title: The SbcCD protein of Escherichia coli is related to two putative nucleases in the UvrA superfamily of nucleotide-binding proteins.
PubMed: 1490631
MedLine:
Source:
Genetica. 1992;87(2):95-100.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1490631
ReferenceID:36791
Author/Investigator(s): Connelly JC, de Leau ES, Okely EA, Leach DR.
Title: Overexpression, purification, and characterization of the SbcCD protein from Escherichia coli.
PubMed: 9242643
MedLine:
Source:
J Biol Chem. 1997 Aug 8;272(32):19819-26.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9242643
Homologs By Global Alignment
Gene ID:40

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
79 PA4282_tr translation of PA4282 1211 98.26 98.84 0 5935.0
11500 gb|AAG07670.1|AE004844_2 (AE004844) probable exonuclease [Pseudomonas aeruginosa PAO1] 1211 98.26 98.84 0 5935.0
11501 gb|AAN67638.1|AE016393_7 (AE016781) exonuclease SbcC [Pseudomonas putida KT2440] 1259 46.86 62.19 93 2505.0
11502 gb|AAO57235.1| (AE016869) exonuclease SbcC [Pseudomonas syringae pv. tomato str. DC3000] 1247 44.26 60.22 69 2321.0
GC ORFID: 43042How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4282Glimmer Score:
Start: 4222764Stop: 4226399
Length: 3636
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4282 translation of PA4282Homolog Bit Score 2290.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene670 (ORF: BLASTX 893.0), t_PA4282 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGATTCTCGCCATCCGCCTGAAGAACCTCGCCTCCCTCGCTGGCGAGCAGGAAATCGACTTCACCCGC
GAACCGCTGTCCAGCGCCGGCCTGTTCGCCATCACCGGCCCGACCGGCGCCGGCAAGAGCACCGTGCTGGAC
GCCCTGTGCCTGGCCCTGTTCGGCAGCACGCCGCGGCTGGAAAGCACTTCGGCCAGCAGCAAGGTTCCCGAT
GGCCGGAACGAGCTGTCCAGCAACGACGAACGCAACCTGCTGCGCCGCGGTTGCGCCAACGGCTACGCCGAA
GTGGATTTCGTCGGCATCGACGGCCACCGCTATCGCGCCCGCTGGGAAACCCGGCGCTCCCGGGACAAGGCG
GACGGCGCCTTGCAAAAGAGCCAGCAGAGCCTCCAGGACCTGGAGACCCAGCAAATGCTGGCAGCGAACAAG
AAAAGCGAGTTCCGCGAACAGCTGGAGCAGAAGCTCGGCCTCAATTTCGCCCAGTTCACTCGCGCCGTGCTG
CTGGCCCAGAGCGAATTCAGCGCCTTCCTCAAGGCCAGCGACAACGACCGCGGCGCATTGCTGGAGAAACTC
ACCGACACCGGCCTGTACAGCCAATTGAGCAAAGCCGCCTACCAGCGCGCCAGCCAGGCCGACGAGCAGCGC
AAGCAACTCGAGCAACGCCTGGAAGGCAGCCTGCCCCTGGCCGAGCAGGCCCGGGCCGGGCTCGAGGCGGCG
CTGGAATCCCACGCCCAGGCGCGTCTCCAGGAGCAACAGGCCCTGCAGCGCCTGGAAGGCCAGCAACAATGG
TTCACCGAGGAGCAGCGGCTGCTGCAATCCTGCGAGCACGCACAAGGCCAACTGGCCGAGGCCAGGCAGGCC
TGGGACGCCCTGGCGACGGAGCGGGAAACCCTGCAATGGCTGGAGCGCCTGGCTCCGGTTCGCGGACTGATC
GAACGCCTGAAGCAACTCGAGCAGGAACTCCGGCACTCCGAGCAGCAGCAGCGGCAGCGCACCGAGCAGCAA
GCCGCGGGCGCCGAGCGCTTGCAAGGATTGCAGGCCCGCGTGCAGGAGGCGCGCGAGCGCCAGGCCCAGGCC
GACGACCATCTGCGTCAGGCCCAGGCGCCGTTGCGCGAGGCTTTCCAGCTGGAGAGCGAGGCCAGGCGCCTG
GAGCGAACGCTGGCCGAGCGACAGGCACTCCATCGGCAATCGAACCAGCGCCACGCCCAGCAAAGCGACGCC
GCTCGGCAACTGGATATGGAGCAGCAGCGCCATGTCGCGGAACAGGCGCAACTGCAGGCGGCATTGCGCGAC
AGCCAGGCTCTCGCCGCGCTCGGCGACGCCTGGGCGACCCACCAGGGCCAGCTCGCCGCCTTCGTGCAACGT
CGCCAGCGCGCGCTCGAAAGCCAGGCGCAGCTCCCCGAGCTGGAAAAATCCCTGGCCCAGGCCGGGGAACCG
CTCGAACGCTTGCAGGCGCAATGGACCGCCCTCCATGGCAGCGAGCCGGACGACCTGGCGGCACGCCTGGAC
GAATTGCGCCGGCAGACCGATAGCCTGGAACGACAACAAGCGCTCCACAAGGAATGGCAACAGGCCCTCGAC
CAACGCACCGGCCTGGCTCGACGCCTGGGCGAACTCGACCAGCGTATGGTCGAGCAGGAGCAGGCATTGCTC
GACCTGAAACGACAAGGCAGCCAATACGCCGAGGAGGTGAAGGCGGCGGAGCAGGCCCTGGAGGTCACCCGC
GAGTTGCTCCAACGCCAACGTCTGGCCCGCAGCGCCAGCGTCGAGCAACTGCGCGCCGGCCTGGTGGACGGC
GAGGCCTGCCCGGTCTGCGGCAGCCAGGAGCATCCCTATCACCATTCCGAGCAACTGCTCGCCGCCCTCGGT
GAACACGACGACCAGGAGCAGGTCCGCGCCGAGCAGTCCCTCGAGCGGCTGCGACAGACCCTGGTCGGTCTG
CGCGAGGGCTATTCCAGCCAGCGGGAAAGACTCAACCAGAGTCGCCAGGAGCAGCAGGAACTGACCGGCCAC
CTAGCCGCGCTCGATCGGCAACTGGAGCAATGGACGCTGCCGGAAGAACTGCGACTCCTGCAGCCGTCCGCG
CAGTTGGAGTGGCTGGCACAACGCCTGGACGACCTGGCAGGGCAGCGCCAGCAGCGCCAACGAGACTTCGAC
CGGCTGATCGCCCGCCAGCGCCAGACCCAGCAATTGCAGCAGGAACTGCGGGCCGCCGAGACGAGCCTGCAA
CAGCGCCAGCAGGCGCTGACGGAACAACGGCAGCGCTACGAACATTTGCAGCAGCAGGTCGAGGAGGACAGC
CAGCAATTGCGTCCATTGCTCTCCGACGAGCACTGGCAGCGCTGGCAGGCAGATCCGCTGCGGACTTTCCAG
GCCCTCGGCGAGTCCATCGAGCAACGCCGGCAGCAACAGGCGCGGCTTCAGCAGGTCGAACAGCGTCTGCAG
GAGCTCAAGCAGCGCTGCGATGAATCAAGCTGGCAACTGAAGCAAAGCGACGAGCAACGCAACGAAGCCCGC
CAGGCAGAGGAAAGGGTCCAGGCGGAACTCGCCGAGCTGAACGGACGCCTCGGCGCTCACCTGGGCCAGCAC
GCCTGCGCCCAGGACTGGCAACTATCGCTGGAGCACGCCGCGCAAGCGGCGCAGAGCGCTGTCGAGACGCTC
CAGGCGCCCCTGGATTCGCTGCGCGAGGAACAACTGCGACTCGCCGAAGCCCTGGAACACCTGCAGCAGCAA
CGGCAGCGCCAACAGGATGAGTTCCAGCGCCTGCAGGCCGACTGGCAGGCCTGGCGCGAACGCCAGGACAAC
CTCGACGACAGCCGCCTCGACGCCCTGCTCGGCCTTTCCGAGGAACAGGCGACGCAATGGCGGGAGCAATTG
CAGCGACTGCAAGAGGAGATCACCCGCCAGCAGACGCTGGAAGCGGAGCGCCAGGCGCAACTGCTCCAGCAT
CGCCGGCAGCGGCCGGAAACCGACCGCGAGGCGCTGGAAGACAACCTGCGGCAACAGCGCGAACGCCTGGCC
ACCAGCGAACAGGCCTACCTGGATACCTACAGCCAGTTGCAGGCCGACAACCAGCGCCGCGAGCAGAGCCAG
GCGCTGCTTGCCGAGCTGGAGCGAGCCCGCGCCGAGTTCCGTAGATGGGGCCGCCTGAACGAACTGATCGGT
TCGTCCAGCGGCGACAAGTTCCGCCGCATCGCCCAGGGCTACAACCTCGACCTGCTGGTGCAGCACAGCAAC
GTGCAGTTGCGCCAGTTGGCGCGGCGCTACCGCCTGCAGCGCGGCGGCAGCGAACTGGGCCTACTGGTGGTG
GACACCGAGATGGGCGACGAACTGCGCTCGGTGTATTCGCTCTCCGGCGGCGAGACCTTCCTGATTTCCCTG
GCCCTGGCGCTCGGCCTGGCCTCGATGGCATCGAGCAAGCTGCGCATCGAGTCGCTGTTCATCGACGAAGGC
TTCGGCAGCCTCGACCCGGAATCCCTGCAACTGGCGATGGATGCCCTGGACAACCTGCAGGCCCAGGGGCGC
AAGGTGGCGGTGATTTCCCACGTCCAGGAAATGCACGAACGGATCCCGGTCCAGGTGCGGGTCCAGCGCGAG
GGCAACGGCATGAGCAGCCTGAAGGTGGTCGGCTGA