ViewGene
Locus Name:
GeneID:
Location:

GeneID:3999
TrivialName: PA14_61460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61460
PAO1 Ortholog Locus:PA4645
Sequence Length:558
Protein Length:185
Start: 5484619
Stop: 5484062
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08032.1|AE004878_10 (AE004878) probable purine/pyrimidine phosphoribosyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 184/185 (99%), Positives = 184/185 (99%)
Sequence:
ATGTCCGTCGATCTCGCGCACATCCGCCAAGTCATGGCGGAAGCCGACTGCCTGTTCAACAACGACGAGGTC
GAGGCAGCCATCGGTCGCGTCGCCGAGGCGATCAACCGCGATCTCGGCGAGACCAACCCGGTGGTCTTCTGC
GTGATGAACGGCGGCCTGATCTTCTCCGGCAAGCTGCTCCCGCTGCTCGACTTCCCCCTCGAACTGTCCTAC
CTGCATGCGACCCGTTACCGCAACGAGACCTCCGGCGGCGAACTGTTCTGGAAGGCCAAGCCGGAAATCTCC
TTCATCGACCGTGACGTGCTGATCATCGACGACATCCTCGACGAAGGGCACACCCTCTCGGCGATCATCGAC
TTCTGCAAGCATGCCGGCGCACGCGCGGTGCACACCGCCGTACTGGTGGACAAGGAACATGAGCGCAAGGCC
CGGCCCGACCTCAAGGCCAGCTTCACCGGCCTCTACTGCGCCGACCGCTACGTGTTCGGCTACGGCATGGAC
TACAAGGGCTACTGGCGCAACGCCGCGGGCATCTTCGCGGTCAAGGGGCTCTGA
Translation:
MSVDLAHIRQVMAEADCLFNNDEVEAAIGRVAEAINRDLGETNPVVFCVMNGGLIFSGKLLPLLDFPLELSY
LHATRYRNETSGGELFWKAKPEISFIDRDVLIIDDILDEGHTLSAIIDFCKHAGARAVHTAVLVDKEHERKA
RPDLKASFTGLYCADRYVFGYGMDYKGYWRNAAGIFAVKGL*
AnnotationID:4006GeneID:3999
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 18:06:51
Gene Name:
Confidence Code:3
GeneProduct:putative hypoxanthine phosphoribosyltransferase
Cell Localization:()
Synonyms:hpt
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0634
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54660.1| (AE016859) hypoxanthine phosphoribosyltransferase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 185

 Score =  313 bits (802), Expect = 3e-85
 Identities = 146/185 (78%), Positives = 164/185 (88%)

>gb|AAN66372.1|AE016265_6 (AE016776) hypoxanthine phosphoribosyltransferase, putative
           [Pseudomonas putida KT2440]
          Length = 185

 Score =  311 bits (797), Expect = 1e-84
 Identities = 148/185 (80%), Positives = 164/185 (88%)






 
Structural Features:
COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase 
[Nucleotide transport and metabolism]
CD-Length = 178 residues,  98.9% aligned
Score =  201 bits (514), Expect = 7e-53
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 3/178 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8000




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25143




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31583




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3999_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3999
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6236
                           PA4645_tr
                           translation of PA4645
                           185
                           99.45
                           99.45
                           0
                           965.0
     

     
     
172514
                           gb|AAG08032.1|AE004878_10
                           (AE004878) probable purine/pyrimidine phosphoribosyl transferase [Pseudomonas aeruginosa PAO1]
                           185
                           99.45
                           99.45
                           0
                           965.0
     

     
     
172516
                           gb|AAN66372.1|AE016265_6
                           (AE016776) hypoxanthine phosphoribosyltransferase, putative [Pseudomonas putida KT2440]
                           185
                           80.00
                           88.64
                           0
                           797.0
     

     
     
172515
                           gb|AAO54660.1|
                           (AE016859) hypoxanthine phosphoribosyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           185
                           78.91
                           88.64
                           0
                           802.0
     

     
     
172517
                           gb|AAR34344.1|
                           (AE017210) hypoxanthine phosphoribosyltransferase, putative [Geobacter sulfurreducens PCA]
                           185
                           64.86
                           74.59
                           0
                           620.0
     

     






      

          
GC ORFID: 47001How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4645Glimmer Score: 

          
Start: 4748299Stop: 4747742

          
Length: 558


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4645 translation of PA4645Homolog Bit Score 376.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4308 (ORF: BLASTX 314.0), t_PA4645 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGTCGATCTCGCGCACATCCGCCAAGTCATGGCGGAAGCCGACTGCCTGTTCAACAACGACGAGGTC 
GAGGCAGCCATCGGTCGCGTCGCCGAGGCGATCAACCGCGATCTCGGCGAGACCAACCCGGTGGTCTTCTGC 
GTGATGAACGGCGGCCTGATCTTCTCCGGCAAGCTGCTCCCGCTGCTCGACTTCCCCCTCGAACTGTCCTAC 
CTGCATGCGACCCGTTACCGCAACGAGACCTCCGGCGGCGAACTGTTCTGGAAGGCCAAGCCGGAAATCTCC 
TTCATCGACCGTGACGTGCTGATCATCGACGACATCCTCGACGAAGGGCACACCCTCTCGGCGATCATCGAC 
TTCTGCAAGCATGCCGGCGCACGCGCGGTGCACACCGCCGTACTGGTGGACAAGGAACATGAGCGCAAGGCC 
CGGCCCGACCTCAAGGCCAGCTTCACCGGCCTCTACTGCGCCGACCGCTACGTGTTCGGCTACGGCATGGAC 
TACAAGGGCTACTGGCGCAACGCCGCGGGCATCTTCGCGGTCAAGGGGCTCTGA