ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3998

TrivialName: PA14_51500

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_51500

PAO1 Ortholog Locus: PA0989

Sequence Length: 561

Protein Length: 186

Start: 4579069

Stop: 4579629

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAP82962.1| (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa] Identities = 185/186 (99%), Positives = 185/186 (99%)

Sequence:

ATGGGCAAACCATTCCTTCACGCTCGGCGCTGGCTGCTGCCGCTCGCCTTCATCTGCACGGCAACGACTGCG
GTCGCCGAAAGCACCGGCGACTACTGGATCGTCTACGGCAAGGGCGAACGCTACAACAACGAGGTATTCGTC
GCCAACGCCACCGGCATCTTGCAGCAACCCAAAGGTATCCAGTCGGCGCAGATCATCCAGCTATTCGAAGAC
CGGTCGATGCCGACGCTGACGGCCTACGAGGTCCAGTTCAAGTGCAAGGAGCGCAGCGTCCGCTTCGACAAC
GCACGCGCCATGCGCCGCATCGACAACGTCATCACCAACGTGAAAACCGTCGACGGCTGGATCGACCCGGAG
AAATACGATTATTGGCTGCAACGCTCGTTCGCCTTCGTCTGCGCCCCGGCCATCCGCGACAACAACCAGATG
TTGCCGCTGGGCAAGATGCCCATTGCGCGCATGGTGCAGACCGTCCAGGCAATGTTCGTCGAACTGCAGGGC
GTCCAGGCCAAGAAACAGACCATGCGCGATCTGGATGCGATGCTCGGCAACGAGTAG

Translation:

MGKPFLHARRWLLPLAFICTATTAVAESTGDYWIVYGKGERYNNEVFVANATGILQQPKGIQSAQIIQLFED
RSMPTLTAYEVQFKCKERSVRFDNARAMRRIDNVITNVKTVDGWIDPEKYDYWLQRSFAFVCAPAIRDNNQM
LPLGKMPIARMVQTVQAMFVELQGVQAKKQTMRDLDAMLGNE*

AnnotationID:4005 GeneID:3998

AnnotatorUID: danlee

Modification Date/Time: 2004-05-12 15:03:10

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA0989

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:7998

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25141

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3998

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

172512 gb|AAP82962.1| (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa] 186 99.46 99.46 0 970.0

6235 PA0989_tr translation of PA0989 186 98.92 98.92 0 965.0

172513 gb|AAG04378.1|AE004532_2 (AE004532) hypothetical protein PA0989 [Pseudomonas aeruginosa PAO1] 186 98.92 98.92 0 965.0

GC ORFID: `47000`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0989`	Glimmer Score:
Start: `374838`	Stop: `374278`
Length: `561`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA0989 translation of PA0989`	Homolog Bit Score `376.0`
Other Homologs: `t_PA0989 (ORF: GLIMMER)`
GC ORF Sequence
ATGGGCAAACCATTCCTTCACGCTCGGCGCTGGCTGCTGCCGCTCGCCTTCATCTGCACGGCAACGACTGCG GTCGCCGAAAGCACCGGCGACTACTGGATCGTCTACGGCAAGGGCGAACGCTACAACAACGAGGTATTCGTC GCCAACGCCACCGGCATCTTGCAGCAACCCAAAGGTATCCAGTCGGCGCAGATCATCCAGCTATTCGAAGAC CGGTCGATGCCGACGCTGACGGCCTACGAGGTCCAGTTCAAGTGCAAGGAGCGCAGCGTCCGCTTCGACAAC GCACGCGCCATGCGCCGCATCGACAACGTCATCACCAACGTGAAAACCGTCGACGGCTGGATCGACCCGGAG AAATACGATTATTGGCTGCAACGCTCGTTCGCCTTCGTCTGCGCCCCGGCCATCCGCGACAACAACCAGATG TTGCCGCTGGGCAAGATGCCCATTGCGCGCATGGTGCAGACCGTCCAGGCAATGTTCGTCGAACTGCAGGGC GTCCAGGCCAAGAAACAGACCATGCGCGATCTGGATGCGATGCTCGGCAACGAGTAG