ViewGene
Locus Name:
GeneID:
Location:

GeneID:3997
TrivialName: PA14_05130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05130
PAO1 Ortholog Locus:PA0392
Sequence Length:594
Protein Length:197
Start: 449555
Stop: 448962
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03781.1|AE004476_11 (AE004476) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGATCGGCCTCAACACCGCTGCTATCTATATCCTCCAGACCCTCGGCAGCCTCTACCTGCTGATCGTGCTG
CTGCGCTTCATCCTGCAACTGGTCCGCGCGGACTTCTACAACCCCCTCAGCCAGTTCATCGTGCGCGCCACC
AAGCCGCTGCTGAACCCGCTGCGGCGGATCATCCCCGGCTTCGGCGGGATCGACCTGGCCTCGCTGGTGCTG
GCGATCCTGATCCAACTGGTGCTGATGATCCTGATCCTGATGCTGATGGGCTACGGCGTCGGCGGCTTCATC
ATGCAACTGCTGATCTGGTCGATCATCGCCGTCACCTCGCTGTTCCTGAAGGTGTTCTTCTTCGCCCTGATC
ATCAGCGTGATCCTTTCCTGGGTCGCCCCGGGCAGCTACAACCCCGGCGCGCAACTGGTGAACCAGATCTGC
GAACCGCTGCTGATGCCGTTCCGCAAGCTCCTGCCGAACCTCGGCGGACTGGATCTCTCGCCGATCTTCGCG
TTCCTCGCGCTGAAGCTGATCGACATGCTGGTGATCAACAACCTGGCGGCCATGACCGGCATGCCCCAGCAG
TTGAGCATCTTCCTCTGA
Translation:
MIGLNTAAIYILQTLGSLYLLIVLLRFILQLVRADFYNPLSQFIVRATKPLLNPLRRIIPGFGGIDLASLVL
AILIQLVLMILILMLMGYGVGGFIMQLLIWSIIAVTSLFLKVFFFALIISVILSWVAPGSYNPGAQLVNQIC
EPLLMPFRKLLPNLGGLDLSPIFAFLALKLIDMLVINNLAAMTGMPQQLSIFL*
AnnotationID:4004GeneID:3997
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:56
Gene Name:
Confidence Code:3
GeneProduct:putative YGGT family protein
Cell Localization:()
Synonyms:PA0392
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58476.1| (AE016874) YGGT family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 196

 Score =  295 bits (754), Expect = 1e-79
 Identities = 147/197 (74%), Positives = 174/197 (88%), Gaps = 1/197 (0%)

>gb|AAN70661.1|AE016710_6 (AE016793) YGGT family protein [Pseudomonas putida KT2440]
          Length = 196

 Score =  239 bits (609), Expect = 9e-63
 Identities = 117/193 (60%), Positives = 158/193 (81%), Gaps = 1/193 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7996




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25139




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3997
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6234
                           PA0392_tr
                           translation of PA0392
                           197
                           99.99
                           99.99
                           0
                           967.0
     

     
     
172508
                           gb|AAG03781.1|AE004476_11
                           (AE004476) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           197
                           99.99
                           99.99
                           0
                           967.0
     

     
     
172509
                           gb|AAO58476.1|
                           (AE016874) YGGT family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           197
                           74.61
                           88.32
                           1
                           756.0
     

     
     
172510
                           gb|AAN70661.1|AE016710_6
                           (AE016793) YGGT family protein [Pseudomonas putida KT2440]
                           197
                           59.39
                           80.71
                           1
                           607.0
     

     
     
172511
                           gb|AAN56353.1|AE015772_13
                           (AE015772) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           209
                           36.36
                           55.02
                           39
                           362.0
     

     






      

          
GC ORFID: 46999How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0392Glimmer Score: 

          
Start: 6250897Stop: 6250304

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0392 translation of PA0392Homolog Bit Score 377.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3720 (ORF: BLASTX 295.0), t_PA0392 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGGCCTCAACACCGCTGCTATCTATATCCTCCAGACCCTCGGCAGCCTCTACCTGCTGATCGTGCTG 
CTGCGCTTCATCCTGCAACTGGTCCGCGCGGACTTCTACAACCCCCTCAGCCAGTTCATCGTGCGCGCCACC 
AAGCCGCTGCTGAACCCGCTGCGGCGGATCATCCCCGGCTTCGGCGGGATCGACCTGGCCTCGCTGGTGCTG 
GCGATCCTGATCCAACTGGTGCTGATGATCCTGATCCTGATGCTGATGGGCTACGGCGTCGGCGGCTTCATC 
ATGCAACTGCTGATCTGGTCGATCATCGCCGTCACCTCGCTGTTCCTGAAGGTGTTCTTCTTCGCCCTGATC 
ATCAGCGTGATCCTTTCCTGGGTCGCCCCGGGCAGCTACAACCCCGGCGCGCAACTGGTGAACCAGATCTGC 
GAACCGCTGCTGATGCCGTTCCGCAAGCTCCTGCCGAACCTCGGCGGACTGGATCTCTCGCCGATCTTCGCG 
TTCCTCGCGCTGAAGCTGATCGACATGCTGGTGATCAACAACCTGGCGGCCATGACCGGCATGCCCCAGCAG 
TTGAGCATCTTCCTCTGA