ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3996

TrivialName: PA14_67540

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_67540

PAO1 Ortholog Locus: PA5115

Sequence Length: 585

Protein Length: 194

Start: 6034319

Stop: 6033735

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08500.1|AE004924_5 (AE004924) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 193/194 (99%), Positives = 193/194 (99%)

Sequence:

ATGTGGGACGAACGCTATGCCGCCGAAGAGTATGTCTACGGAACCGAACCCAACGCTTTCCTGAAGGAGCAT
GCGCAGCGGCTGGCCGGGCCGGTGCTGAGCGTCGCCGAGGGCGAGGGGCGCAACGCGGTGTTCCTCGCTTCG
CTGGGGCTGGAGGTGCTTGGCGTGGACGGCTCCGCCGTCGGCCTGGCCAAGGCGCGCCGGCTGGCCGAGGCG
AAAGGCGTGTCGATCGACACCCTGGTGGTCGACCTGGCGGACTACGAACCGCCGGCAGCGGCGTTCGGAGCG
GTGGTGTCGATCTTCGCGCACCTGCCCAGTCGCGTGCGCGGCAGACTCAACCGCCTGCTGGAGCGTTCGCTG
CGACCGGGCGGTCTCTTCCTGCTGGAGGCCTATCGGCCGGAACAACTCGGCCGCGGCACCGGCGGCCCGGCG
GACGTCGACATGCTGGTGAGCCGTGCGGCGCTGGAGGCTGAGCTGCCGGAGTGCGAAGTGCTGCTGGCGCGG
GAAATCGAGCGCGAGGTGGTCGAGGGCCGTTTCCACACCGGCGCGGCCTGCGTGGTCCAGTTCATCGCCAGG
AAGAGGTAG

Translation:

MWDERYAAEEYVYGTEPNAFLKEHAQRLAGPVLSVAEGEGRNAVFLASLGLEVLGVDGSAVGLAKARRLAEA
KGVSIDTLVVDLADYEPPAAAFGAVVSIFAHLPSRVRGRLNRLLERSLRPGGLFLLEAYRPEQLGRGTGGPA
DVDMLVSRAALEAELPECEVLLAREIEREVVEGRFHTGAACVVQFIARKR*

AnnotationID:4003 GeneID:3996

AnnotatorUID: diggins

Modification Date/Time: 2005-03-15 08:08:06

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA5115

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:7994

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25137

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34929

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3996_cdd.html

URL:

Homologs By Global Alignment

Gene ID:3996

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6233 PA5115_tr translation of PA5115 194 99.48 99.48 0 968.0

172503 gb|AAG08500.1|AE004924_5 (AE004924) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 194 99.48 99.48 0 968.0

172504 gb|AAR33901.1| (AE017208) conserved hypothetical protein [Geobacter sulfurreducens PCA] 201 56.21 64.17 7 507.0

172505 dbj|BAA18831.1| (D90917) ORF_ID:slr1183~unknown protein [Synechocystis sp. PCC 6803] 195 50.76 69.23 2 495.0

172506 dbj|BAC07744.1| (AP005369) ORF_ID:tlr0191~hypothetical protein [Thermosynechococcus elongatus BP-1] 196 46.93 63.26 2 439.0

GC ORFID: `46998`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5115`	Glimmer Score:
Start: `5298004`	Stop: `5297420`
Length: `585`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA5115 translation of PA5115`	Homolog Bit Score `377.0`
Other Homologs: `t_PA5115 (ORF: GLIMMER)`
GC ORF Sequence
ATGTGGGACGAACGCTATGCCGCCGAAGAGTATGTCTACGGAACCGAACCCAACGCTTTCCTGAAGGAGCAT GCGCAGCGGCTGGCCGGGCCGGTGCTGAGCGTCGCCGAGGGCGAGGGGCGCAACGCGGTGTTCCTCGCTTCG CTGGGGCTGGAGGTGCTTGGCGTGGACGGCTCCGCCGTCGGCCTGGCCAAGGCGCGCCGGCTGGCCGAGGCG AAAGGCGTGTCGATCGACACCCTGGTGGTCGACCTGGCGGACTACGAACCGCCGGCAGCGGCGTTCGGAGCG GTGGTGTCGATCTTCGCGCACCTGCCCAGTCGCGTGCGCGGCAGACTCAACCGCCTGCTGGAGCGTTCGCTG CGACCGGGCGGTCTCTTCCTGCTGGAGGCCTATCGGCCGGAACAACTCGGCCGCGGCACCGGCGGCCCGGCG GACGTCGACATGCTGGTGAGCCGTGCGGCGCTGGAGGCTGAGCTGCCGGAGTGCGAAGTGCTGCTGGCGCGG GAAATCGAGCGCGAGGTGGTCGAGGGCCGTTTCCACACCGGCGCGGCCTGCGTGGTCCAGTTCATCGCCAGG AAGAGGTAG