ViewGene

Locus Name:
GeneID:
Location:

GeneID:3995
TrivialName: PA14_57180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57180
PAO1 Ortholog Locus:PA4399
Sequence Length:579
Protein Length:192
Start: 5093655
Stop: 5094233
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07787.1|AE004855_9 (AE004855) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 191/192 (99%), Positives = 191/192 (99%)
Sequence:
ATGGGCAATCGATTGTCGAAGATCTACACCCGTACCGGCGACCGCGGCGAGACCGGCCTGGCCGGCGGACGC
CGGGTGCCCAAGAGCCATCCACGCATCGAGGCGATCGGCGCGGTGGACGAATTGAACAGCCAGTTGGGCCTG
CTCCTTGCCGAGCTGCTGGAAGCGCGTGGCGCACATCCCGGCCTGGAGGAGATCGTCCAGGCGCTAGCGCCA
GTGCAACACCGCCTGTTCGACCTCGGCGGGGAGCTGGCGATGCCGGAGTATCGGGCCCTGGACGAGACGGAA
GTGGCACGCCTGGAAAGCTGCATCGACCGCTGGAACGACGAGCTGGGCCCGCTGAAGAATTTCATCCTCCCC
GGCGGTTCCCGCCTGGTCGCCCAGGCCCATGTCTGCCGCAGTCTGGCGCGCAGCGCCGAACGGCGCTGCCAG
GCGCTGGACCAGGAGGAAACGCTGGAGGGCGTCGGCCTGCGCTACCTGAACCGGCTCTCCGACCTGCTGTTC
GTCGCCGCCCGCGCCATCGCCCGGCGCCAGGGCGTGGCGGAGATTCTCTGGGAGGCGGCGGCAAAACCGGAC
TGA
Translation:
MGNRLSKIYTRTGDRGETGLAGGRRVPKSHPRIEAIGAVDELNSQLGLLLAELLEARGAHPGLEEIVQALAP
VQHRLFDLGGELAMPEYRALDETEVARLESCIDRWNDELGPLKNFILPGGSRLVAQAHVCRSLARSAERRCQ
ALDQEETLEGVGLRYLNRLSDLLFVAARAIARRQGVAEILWEAAAKPD*
AnnotationID:4002GeneID:3995
AnnotatorUID: diggins
Modification Date/Time: 2005-05-12 07:07:05
Gene Name:
Confidence Code:3
GeneProduct:putative cob(I)alamin adenosyltransferase
Cell Localization:()
Synonyms:PA4399
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative cobalamin adenosyltransferase
Functional Category Confidence Code:5
COGs:pfam01923
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57845.1| (AE016871) ATP:cob(I)alamin adenosyltransferase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 192

 Score =  284 bits (727), Expect = 2e-76
 Identities = 141/191 (73%), Positives = 157/191 (82%)
Structural Features:
pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase.
CD-Length = 164 residues, 100.0% aligned
Score =  193 bits (492), Expect = 2e-50
Identities = 89/172 (51%), Positives = 111/172 (64%), Gaps = 11/172 (6%)
Genomic Context:
Comment:
ReferenceID:7992
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25135
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:27656
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3995_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3995

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6232 PA4399_tr translation of PA4399 192 99.47 99.47 0 967.0
172463 gb|AAG07787.1|AE004855_9 (AE004855) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 192 99.47 99.47 0 967.0
172465 gb|AAN66972.1|AE016325_8 (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440] 193 75.12 81.34 6 720.0
172464 gb|AAO57845.1| (AE016871) ATP:cob(I)alamin adenosyltransferase, putative [Pseudomonas syringae pv. tomato str. DC3000] 192 73.43 81.77 0 724.0
172466 gb|AAQ60579.1| (AE016920) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 192 52.08 63.02 10 452.0
GC ORFID: 46997How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4399Glimmer Score:
Start: 4357331Stop: 4357909
Length: 579
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4399 translation of PA4399Homolog Bit Score 377.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene317 (ORF: BLASTX 282.0), t_PA4399 (ORF: GLIMMER)
GC ORF Sequence
ATGGGCAATCGATTGTCGAAGATCTACACCCGTACCGGCGACCGCGGCGAGACCGGCCTGGCCGGCGGACGC
CGGGTGCCCAAGAGCCATCCACGCATCGAGGCGATCGGCGCGGTGGACGAATTGAACAGCCAGTTGGGCCTG
CTCCTTGCCGAGCTGCTGGAAGCGCGTGGCGCACATCCCGGCCTGGAGGAGATCGTCCAGGCGCTAGCGCCA
GTGCAACACCGCCTGTTCGACCTCGGCGGGGAGCTGGCGATGCCGGAGTATCGGGCCCTGGACGAGACGGAA
GTGGCACGCCTGGAAAGCTGCATCGACCGCTGGAACGACGAGCTGGGCCCGCTGAAGAATTTCATCCTCCCC
GGCGGTTCCCGCCTGGTCGCCCAGGCCCATGTCTGCCGCAGTCTGGCGCGCAGCGCCGAACGGCGCTGCCAG
GCGCTGGACCAGGAGGAAACGCTGGAGGGCGTCGGCCTGCGCTACCTGAACCGGCTCTCCGACCTGCTGTTC
GTCGCCGCCCGCGCCATCGCCCGGCGCCAGGGCGTGGCGGAGATTCTCTGGGAGGCGGCGGCAAAACCGGAC
TGA