ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3994

TrivialName: PA14_54420

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_54420

PAO1 Ortholog Locus: PA0763

Sequence Length: 585

Protein Length: 194

Start: 4826040

Stop: 4825456

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04152.1|AE004511_5 (AE004511) anti-sigma factor MucA [Pseudomonas aeruginosa PAO1] Identities = 194/194 (100%), Positives = 194/194 (100%)

Sequence:

ATGAGTCGTGAAGCCCTGCAGGAAACTCTGTCCGCTGTGATGGATAACGAAGCGGATGAACTCGAGTTGCGG
CGGGTGCTCGCAGCTTGCGGCGAGGATGCCGAGCTGCGTTCCACCTGGTCGCGCTACCAGTTGGCGCGGTCC
GTCATGCACCGCGAGCCTACCCTGCCGAAGCTGGATATCGCTGCGGCGGTCTCGGCTGCCCTGGCCGACGAG
GCCGCTCCGCCGAAAGCGGAGAAGGGGCCGTGGCGGATGGTCGGTCGCCTGGCGGTCGCTGCCTCGGTGACC
CTGGCGGTGCTGGCCGGCGTGCGTCTGTACAACCAGAACGACGCCCTGCCGCAGATGGCGCAACAGGGGACC
ACCCCGCAGATCGCCCTGCCGCAGGTGAAAGGCCCGGCCGTGCTGGCCGGCTACAGCGAAGAGCAGGGGGCG
CCGCAGGTGATCACCAACTCCTCGTCCAGCGATACCCGCTGGCATGAGCAGCGTCTGCCGATCTACCTGCGT
CAGCACGTGCAACAATCCGCCGTCAGTGGTACAGAGAGCGCGCTGCCCTACGCTCGGGCAGCCAGCCTGGAA
AACCGCTGA

Translation:

MSREALQETLSAVMDNEADELELRRVLAACGEDAELRSTWSRYQLARSVMHREPTLPKLDIAAAVSAALADE
AAPPKAEKGPWRMVGRLAVAASVTLAVLAGVRLYNQNDALPQMAQQGTTPQIALPQVKGPAVLAGYSEEQGA
PQVITNSSSSDTRWHEQRLPIYLRQHVQQSAVSGTESALPYARAASLENR*

AnnotationID:4001 GeneID:3994

AnnotatorUID: danlee

Modification Date/Time: 2004-04-14 14:02:35

Gene Name: mucA

Confidence Code: 1

GeneProduct: anti-sigma factor MucA

Cell Localization: ()

Synonyms: PA0763

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (23) Secreted Factors (toxins, enzymes, alginate)

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3073

Secondary Functional Category(ies): Cell wall / LPS / capsule; Transcriptional regulators

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG3073, RseA, Negative regulator of sigma E activity [Signal transduction mechanisms]
      CD-Length = 213 residues, 100.0% aligned
      Score =  146 bits (370), Expect = 3e-36

Genomic Context:

Comment:

ReferenceID:7990

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25133

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3994

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6231 PA0763_tr translation of PA0763 194 99.99 99.99 0 969.0

172449 gb|AAG04152.1|AE004511_5 (AE004511) anti-sigma factor MucA [Pseudomonas aeruginosa PAO1] 194 99.99 99.99 0 969.0

172450 gb|AAC43715.1| (U49151) MucA [Pseudomonas aeruginosa] 194 99.99 99.99 0 969.0

172451 gb|AAA87629.1| (L14760) mucA gene product [Pseudomonas aeruginosa] 194 99.99 99.99 0 969.0

172452 gb|AAA87632.1| (L14761) mucA gene product [Pseudomonas aeruginosa] 194 74.22 74.22 45 704.0

GC ORFID: `46996`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0763`	Glimmer Score:
Start: `127867`	Stop: `128451`
Length: `585`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0763 translation of PA0763`	Homolog Bit Score `377.0`
Other Homologs: `t_PA0763 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGTCGTGAAGCCCTGCAGGAAACTCTGTCCGCTGTGATGGATAACGAAGCGGATGAACTCGAGTTGCGG CGGGTGCTCGCAGCTTGCGGCGAGGATGCCGAGCTGCGTTCCACCTGGTCGCGCTACCAGTTGGCGCGGTCC GTCATGCACCGCGAGCCTACCCTGCCGAAGCTGGATATCGCTGCGGCGGTCTCGGCTGCCCTGGCCGACGAG GCCGCTCCGCCGAAAGCGGAGAAGGGGCCGTGGCGGATGGTCGGTCGCCTGGCGGTCGCTGCCTCGGTGACC CTGGCGGTGCTGGCCGGCGTGCGTCTGTACAACCAGAACGACGCCCTGCCGCAGATGGCGCAACAGGGGACC ACCCCGCAGATCGCCCTGCCGCAGGTGAAAGGCCCGGCCGTGCTGGCCGGCTACAGCGAAGAGCAGGGGGCG CCGCAGGTGATCACCAACTCCTCGTCCAGCGATACCCGCTGGCATGAGCAGCGTCTGCCGATCTACCTGCGT CAGCACGTGCAACAATCCGCCGTCAGTGGTACAGAGAGCGCGCTGCCCTACGCTCGGGCAGCCAGCCTGGAA AACCGCTGA