ViewGene
Locus Name:
GeneID:
Location:

GeneID:3993
TrivialName: PA14_20590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20590
PAO1 Ortholog Locus:PA3363
Sequence Length:591
Protein Length:196
Start: 1772027
Stop: 1772617
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06751.1|AE004758_8 (AE004758) aliphatic amidase regulator [Pseudomonas aeruginosa PAO1]
Identities = 192/196 (97%), Positives = 196/196 (100%)
Sequence:
ATGAGCGCCAACTCGCTGCTTGGCAGCCTGCGCGAGTTGCAGGTGCTGGTACTCAACCCGCCGGGAGAGGTC
AGCGACGCCCTGGTCTTGCAACTGATCCGCATCGGTTGTTCGGTGCGCCAGTGCTGGCCGCCGCCGGAAGCT
TTCGACGTGCCGGTGGACGTGGTCTTCACCAGCATTTTCCAGAATCGCCACCACGACGAGATCGCTGCGCTG
CTCGCCGCCGGGACTCCGCGCACTACCCTGGTGGCGCTGGTGGAGTACGAAAGCCCCGCGGTGCTCTCGCAG
ATCATCGAACTGGAGTGCCACGGCGTGATCACCCAGCCGCTCGACGCCCACCGGGTGCTGCCTGTGCTGGTA
TCGGCGCGGCGCATCAGCGAGGAAATGGCGAAGCTGAAGCAGAAGACCGAGCAGCTCCAGGACCGCATTGCC
GGCCAGGCCCGGATCAACCAGGCCAAGGCGTTGCTGATGCAGCGCCATGGCTGGGACGAGCGCGAGGCGCAC
CAGTACCTGTCACGGGAGGCGATGAAGCGACGCGAGCCGATCCTGAAGATCGCCCGGGAGTTGCTGGGAGAC
GAGCCGTCCGCCTGA
Translation:
MSANSLLGSLRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFDVPVDVVFTSIFQNRHHDEIAAL
LAAGTPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISEEMAKLKQKTEQLQDRIA
GQARINQAKALLMQRHGWDEREAHQYLSREAMKRREPILKIARELLGDEPSA*
AnnotationID:4000GeneID:3993
AnnotatorUID: danlee
Modification Date/Time: 2004-02-18 10:10:10
Gene Name:amiR
Confidence Code:1
GeneProduct:aliphatic amidase regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3707
Secondary Functional Category(ies):Carbon compound catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:
amiEBCRS (Pseudomonas aeruginosa)






   
Comment:


















    ReferenceID:7988




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17048




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search






    
Reference Type:Blast (text/plain)







    
Data:PA3363_CDS.cgi


    		




 
URL:

















    ReferenceID:25131




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3993
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6230
                           PA3363_tr
                           translation of PA3363
                           196
                           97.95
                           99.99
                           0
                           971.0
     

     
     
172447
                           gb|AAG06751.1|AE004758_8
                           (AE004758) aliphatic amidase regulator [Pseudomonas aeruginosa PAO1]
                           196
                           97.95
                           99.99
                           0
                           971.0
     

     
     
172448
                           emb|CAA32023.1|
                           (X13776) amiR [Pseudomonas aeruginosa]
                           196
                           97.44
                           98.97
                           0
                           962.0
     

     






      

          
GC ORFID: 46995How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3363Glimmer Score: 

          
Start: 3181905Stop: 3181315

          
Length: 591


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3363 translation of PA3363Homolog Bit Score 378.0

          
Other Homologs:  t_PA3363 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCAACTCGCTGCTTGGCAGCCTGCGCGAGTTGCAGGTGCTGGTACTCAACCCGCCGGGAGAGGTC 
AGCGACGCCCTGGTCTTGCAACTGATCCGCATCGGTTGTTCGGTGCGCCAGTGCTGGCCGCCGCCGGAAGCT 
TTCGACGTGCCGGTGGACGTGGTCTTCACCAGCATTTTCCAGAATCGCCACCACGACGAGATCGCTGCGCTG 
CTCGCCGCCGGGACTCCGCGCACTACCCTGGTGGCGCTGGTGGAGTACGAAAGCCCCGCGGTGCTCTCGCAG 
ATCATCGAACTGGAGTGCCACGGCGTGATCACCCAGCCGCTCGACGCCCACCGGGTGCTGCCTGTGCTGGTA 
TCGGCGCGGCGCATCAGCGAGGAAATGGCGAAGCTGAAGCAGAAGACCGAGCAGCTCCAGGACCGCATTGCC 
GGCCAGGCCCGGATCAACCAGGCCAAGGCGTTGCTGATGCAGCGCCATGGCTGGGACGAGCGCGAGGCGCAC 
CAGTACCTGTCACGGGAGGCGATGAAGCGACGCGAGCCGATCCTGAAGATCGCCCGGGAGTTGCTGGGAGAC 
GAGCCGTCCGCCTGA