ViewGene
Locus Name:
GeneID:
Location:

GeneID:3992
TrivialName: PA14_23360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23360
PAO1 Ortholog Locus:
Sequence Length:1083
Protein Length:360
Start: 2026846
Stop: 2027928
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM27707.1|AF498411_4 (AF498411) Wzz [Pseudomonas aeruginosa]
Identities = 359/360 (99%), Positives = 359/360 (99%)
Sequence:
GTGACTGACGGTATTGACTCGCGACAGACGTCCAAGCGTAACGAAATCGATTTTATCGAGCTCATTCAAGGG
CTCTGGTCACAAAAGTGGCTCGTTTTTTCCCTGACTTTTCTAGGTGCTGTTCTGGCGGGGAGCTATGCATTT
TTAAGCAAGCCAGTCTACGAGGCTCGGGTTGCTCTTCTACCGCCATCCCTTAGCGATGTTGCCGGGTTCAAC
ATTGCCCGTGGCCGAGACAGCGGTCTTCCACCTTTTACTGTGAGCCAAGTTTATTCTGTATTCACTCGGAAT
CTGCAGTCCGAAGGCACTCGGAGGCAGTTTTTTCGCGAAGTTTATTTGCCCTCCCTTGAGGAGCGAAAGGGC
TCAATTGATGGCCTCTATAGGGCGTTTTCAGATGATGTAAGTGTTAATCGGCCGTCGAAGGACTTGCCTGAG
CGGTATACTGTCATCCTCAACCGACAGGATCCTGAGCAGGCCGCAAAATGGGCTAAGCAATACGCCGATCTA
GCTGCTCTGCGCTCGATGGATGAAATGCGAGGTAATGCTCAGCGCGAACTTGAGGTGAAGAGCCGCAATATT
CTGCAGCAGATCGACACCCTGCGGCAGGTGGTCAAAGAGCGTCGTAATGATCGTATCGTCCGTTTGAAAGAG
GCTCTGCAGGTTGCCAGAGCAGTGGGGGTAGAAAAACCTCCGCTTATAGGGGCACAGATTGATCAGCAACTG
TCGGCAATCATGGAAGGCAGTCTGATGTATATGAGAGGGACGAAAGCGCTGGAGGCTGAAATCAAAGCCTTG
GAAAAACGGACGTCGGATGATCCATTCATTCCCGCCTTGCCTGGTCTACAAGAGCAGCTTGCTCTTTATGAA
AGTAAACAGTTGAATTTTGATAGAGTTGCGGTTTTTCGCCAAGATGGCGGTGTAGAAATTCCTGACGACCCT
ATCAAGCCAAAAAAGGCTCTCCTCCTTGCTCTTGGTATTTTAGCCGGTGGTGTGTTTGGCGTATTGCTTGCC
TTGCTCCGCCTATTGTTACGTGATGGGCGAAACGGCATGGCGGACTTAAAGCATCCTATGACCAAGGATAAA
TGA
Translation:
MTDGIDSRQTSKRNEIDFIELIQGLWSQKWLVFSLTFLGAVLAGSYAFLSKPVYEARVALLPPSLSDVAGFN
IARGRDSGLPPFTVSQVYSVFTRNLQSEGTRRQFFREVYLPSLEERKGSIDGLYRAFSDDVSVNRPSKDLPE
RYTVILNRQDPEQAAKWAKQYADLAALRSMDEMRGNAQRELEVKSRNILQQIDTLRQVVKERRNDRIVRLKE
ALQVARAVGVEKPPLIGAQIDQQLSAIMEGSLMYMRGTKALEAEIKALEKRTSDDPFIPALPGLQEQLALYE
SKQLNFDRVAVFRQDGGVEIPDDPIKPKKALLLALGILAGGVFGVLLALLRLLLRDGRNGMADLKHPMTKDK
*
AnnotationID:3999GeneID:3992
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 11:11:14
Gene Name:wzz
Confidence Code:1
GeneProduct:O-antigen chain length regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3765
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Lipopolysaccharide biosynthesis
Homology:
gi|20559944|gb|AAM27707.1|  Wzz [Pseudomonas aeruginosa]
gi|20559777|gb|AAM27556.1|  Wzz [Pseudomonas aeruginosa]
     Length=360
     Score =  696 bits (1795),  Expect = 0.0
     Identities = 359/360 (99%), Positives = 359/360 (99%), Gaps = 0/360 (0%)
Structural Features:
COG3765, WzzB, Chain length determinant protein [Cell envelope biogenesis, outer membrane].
             CD-Length = 347 residues,  88.5% aligned
             Score =  163 bits (413), Expect = 4e-41
Genomic Context:
Part of variable O-antigen biosynthetic locus in P. aeruginosa.
Comment:
Most similar to the variant of wzz found in P. aeruginosa serotypes 010 and 019.
ReferenceID:14984
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25129
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38215
Author/Investigator(s): Raymond,C.K., Sims,E.H., Kas,A., Spencer,D.H., Kutyavin,T.V., Ivey,R.G., Zhou,Y., Kaul,R., Clendenning,J.B. and Olson,M.V.
Title: Genetic variation at the O-antigen biosynthetic locus in Pseudomonas aeruginosa
PubMed: 12057956
MedLine:
Source:
J. Bacteriol. 184 (13), 3614-3622 (2002)
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:3992

Identity:

 0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
172419 gb|AAM27707.1|AF498411_4 (AF498411) Wzz [Pseudomonas aeruginosa] 360 99.44 99.72 0 1791.0
172420 gb|AAM27556.1|AF498401_4 (AF498401) Wzz [Pseudomonas aeruginosa] 360 99.44 99.72 0 1791.0
172421 gb|AAM27762.1|AF498414_4 (AF498414) Wzz [Pseudomonas aeruginosa] 360 83.05 88.05 18 1501.0
172422 gb|AAM27642.1|AF498407_4 (AF498407) Wzz [Pseudomonas aeruginosa] 360 83.05 88.05 18 1501.0
172424 gb|AAM27830.1|AF498418_4 (AF498418) Wzz [Pseudomonas aeruginosa] 369 71.54 82.38 23 1343.0
GC ORFID: 46994How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3160Glimmer Score:
Start: 2927085Stop: 2926003
Length: 1083
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3160 translation of PA3160Homolog Bit Score 378.0
Other Homologs:
GC ORF Sequence
GTGACTGACGGTATTGACTCGCGACAGACGTCCAAGCGTAACGAAATCGATTTTATCGAGCTCATTCAAGGG
CTCTGGTCACAAAAGTGGCTCGTTTTTTCCCTGACTTTTCTAGGTGCTGTTCTGGCGGGGAGCTATGCATTT
TTAAGCAAGCCAGTCTACGAGGCTCGGGTTGCTCTTCTACCGCCATCCCTTAGCGATGTTGCCGGGTTCAAC
ATTGCCCGTGGCCGAGACAGCGGTCTTCCACCTTTTACTGTGAGCCAAGTTTATTCTGTATTCACTCGGAAT
CTGCAGTCCGAAGGCACTCGGAGGCAGTTTTTTCGCGAAGTTTATTTGCCCTCCCTTGAGGAGCGAAAGGGC
TCAATTGATGGCCTCTATAGGGCGTTTTCAGATGATGTAAGTGTTAATCGGCCGTCGAAGGACTTGCCTGAG
CGGTATACTGTCATCCTCAACCGACAGGATCCTGAGCAGGCCGCAAAATGGGCTAAGCAATACGCCGATCTA
GCTGCTCTGCGCTCGATGGATGAAATGCGAGGTAATGCTCAGCGCGAACTTGAGGTGAAGAGCCGCAATATT
CTGCAGCAGATCGACACCCTGCGGCAGGTGGTCAAAGAGCGTCGTAATGATCGTATCGTCCGTTTGAAAGAG
GCTCTGCAGGTTGCCAGAGCAGTGGGGGTAGAAAAACCTCCGCTTATAGGGGCACAGATTGATCAGCAACTG
TCGGCAATCATGGAAGGCAGTCTGATGTATATGAGAGGGACGAAAGCGCTGGAGGCTGAAATCAAAGCCTTG
GAAAAACGGACGTCGGATGATCCATTCATTCCCGCCTTGCCTGGTCTACAAGAGCAGCTTGCTCTTTATGAA
AGTAAACAGTTGAATTTTGATAGAGTTGCGGTTTTTCGCCAAGATGGCGGTGTAGAAATTCCTGACGACCCT
ATCAAGCCAAAAAAGGCTCTCCTCCTTGCTCTTGGTATTTTAGCCGGTGGTGTGTTTGGCGTATTGCTTGCC
TTGCTCCGCCTATTGTTACGTGATGGGCGAAACGGCATGGCGGACTTAAAGCATCCTATGACCAAGGATAAA
TGA