ViewGene
Locus Name:
GeneID:
Location:

GeneID:3990
TrivialName: PA14_35210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35210
PAO1 Ortholog Locus:PA2270
Sequence Length:591
Protein Length:196
Start: 3132463
Stop: 3131873
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05658.1|AE004653_1 (AE004653) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 195/196 (99%), Positives = 196/196 (100%)
Sequence:
ATGGCCCGCAAGCCTCGCGCCGAGATGATCGAGGAAACCCGCGCCAAGCTGATCGACGCCGCGCGCCGAGCG
TTCGCCGACAACGGCTACGCCGGCGCCTCGATGGACGACCTGACCGCCAGCGCCGGCCTCACCCGCGGCGCG
CTGTATCACCACTTCGGCGACAAGAAAGGCCTGCTGGCCGCGGTGGTGCAGCAGATCGACGACGAGATGAAC
CTTCGCCTCGGCGCCATCCTGGCTGCCGGCGAGGACCTCTGGAGCGGCTTCCGTGCCTACAACCGGGCCTAC
CTGGAAATGGCCCTGGAAGCGGAAATCCAGCGCATCGTCCTGCGCGATGCCCCGGCCATCCTCGGCAGCCCC
AGCAGCGAGGCCAGCCAACTGCGCTGCCTAAGCTCGATGACCGGGCAACTGCGCGAACTGATGGACAGCGGG
CGGGTCCGCCGCACCGACGCCGAGGCCCTGGCCTGGCTGCTCAACGGCGCGCTGGTGGACGCCGCCCTGCGT
ATCGCCAACGCCGAACACCCGCCGGAGAGCCTGGCCAGGGCCTGCCAGGCCCTGGACGTGCTGCTCGACGGC
CTGCTCATGGAGTGA
Translation:
MARKPRAEMIEETRAKLIDAARRAFADNGYAGASMDDLTASAGLTRGALYHHFGDKKGLLAAVVQQIDDEMN
LRLGAILAAGEDLWSGFRAYNRAYLEMALEAEIQRIVLRDAPAILGSPSSEASQLRCLSSMTGQLRELMDSG
RVRRTDAEALAWLLNGALVDAALRIANAEHPPESLARACQALDVLLDGLLME*
AnnotationID:3997GeneID:3990
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 09:09:54
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA2270
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440,COG1309
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC48723.1| (AL603643) putative transcriptional regulator protein
           [Sinorhizobium meliloti]
          Length = 203

 Score =  189 bits (480), Expect = 8e-48

>gb|AAN69554.1|AE016589_3 (AE016788) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 201

 Score =  181 bits (458), Expect = 3e-45
 Identities = 108/194 (55%), Positives = 134/194 (69%), Gaps = 2/194 (1%)






 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 59.2 bits (144), Expect = 4e-10
Identities = 19/47 (40%), Positives = 31/47 (65%)

COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  93.5% aligned
Score = 50.0 bits (117), Expect = 2e-07
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7982




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25125




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32510




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3990_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3990
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6227
                           PA2270_tr
                           translation of PA2270
                           196
                           99.48
                           99.99
                           0
                           970.0
     

     
     
172412
                           gb|AAG05658.1|AE004653_1
                           (AE004653) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           196
                           99.48
                           99.99
                           0
                           970.0
     

     
     
172415
                           gb|AAN69554.1|AE016589_3
                           (AE016788) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           207
                           53.62
                           66.18
                           17
                           463.0
     

     
     
172413
                           emb|CAC48723.1|
                           (AL603643) putative transcriptional regulator protein [Sinorhizobium meliloti]
                           203
                           51.23
                           61.57
                           7
                           476.0
     

     
     
172414
                           gb|AAK89122.1|
                           (AE008253) AGR_L_1093p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           201
                           50.24
                           61.19
                           5
                           465.0
     

     






      

          
GC ORFID: 46992How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2270Glimmer Score: 

          
Start: 1821453Stop: 1822043

          
Length: 591


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2270 translation of PA2270Homolog Bit Score 378.0

          
Other Homologs:  t_PA2270 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCGCAAGCCTCGCGCCGAGATGATCGAGGAAACCCGCGCCAAGCTGATCGACGCCGCGCGCCGAGCG 
TTCGCCGACAACGGCTACGCCGGCGCCTCGATGGACGACCTGACCGCCAGCGCCGGCCTCACCCGCGGCGCG 
CTGTATCACCACTTCGGCGACAAGAAAGGCCTGCTGGCCGCGGTGGTGCAGCAGATCGACGACGAGATGAAC 
CTTCGCCTCGGCGCCATCCTGGCTGCCGGCGAGGACCTCTGGAGCGGCTTCCGTGCCTACAACCGGGCCTAC 
CTGGAAATGGCCCTGGAAGCGGAAATCCAGCGCATCGTCCTGCGCGATGCCCCGGCCATCCTCGGCAGCCCC 
AGCAGCGAGGCCAGCCAACTGCGCTGCCTAAGCTCGATGACCGGGCAACTGCGCGAACTGATGGACAGCGGG 
CGGGTCCGCCGCACCGACGCCGAGGCCCTGGCCTGGCTGCTCAACGGCGCGCTGGTGGACGCCGCCCTGCGT 
ATCGCCAACGCCGAACACCCGCCGGAGAGCCTGGCCAGGGCCTGCCAGGCCCTGGACGTGCTGCTCGACGGC 
CTGCTCATGGAGTGA