ViewGene

Locus Name:
GeneID:
Location:

GeneID:3989
TrivialName: PA14_40220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40220
PAO1 Ortholog Locus:PA1878
Sequence Length:579
Protein Length:192
Start: 3583268
Stop: 3583846
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05267.1|AE004614_1 (AE004614) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 189/192 (98%), Positives = 190/192 (98%)
Sequence:
ATGTCCCTCGAACTGCTGAGCAACCGCCTCGAATTCCTCCGCGAAGCCGAACGCCTGAAAGACGTCCTGCGC
TCCGCGCACACCTCCTCCGGCCGCCCGGAAAGCACCGCCGAACATAGCTGGCGGCTGTGCCTGATGGCACTG
GCCTTCGAGGACCAACTGGCCGGCCTGGACCTCGGCAAGGTTCTGCGCATGTGCGTGGTCCACGACCTCGGC
GAAGCGATCCACGGCGACATCCCCGCCGTCGAGCAAGCCGCGCACCCGGACAAGGGCGAACAGGAACGCGCC
GACCTGTTGCAGCTGACCCGTCATCTGGACACGCCGCTGCGCGATCGCCTGCTCGCCCTGTGGGACGAATAC
GAGCGCGGCGAGACCGCCGAAGCCCTGGCAGTGAAAGCGCTGGACAAGCTGGAAACCCTGCTCCAGCACACC
CAGGGCGACAATCCGGCGGACTTCGACTATGCCTTCAACCTCGACTACGGCCGTCGCTATACCGACCGCGCA
CCGCTGTTCAAGACCCTGCGCGAGTTACTCGACGCCAGGACCCGACAGCGCCTCGCAGCTCGGCGCGACGCC
TAG
Translation:
MSLELLSNRLEFLREAERLKDVLRSAHTSSGRPESTAEHSWRLCLMALAFEDQLAGLDLGKVLRMCVVHDLG
EAIHGDIPAVEQAAHPDKGEQERADLLQLTRHLDTPLRDRLLALWDEYERGETAEALAVKALDKLETLLQHT
QGDNPADFDYAFNLDYGRRYTDRAPLFKTLRELLDARTRQRLAARRDA*
AnnotationID:3996GeneID:3989
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:45
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA1878
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1896
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO35772.1| (AE015940) hydrolase (HAD superfamily) [Clostridium tetani E88]
          Length = 193

 Score =  124 bits (312), Expect = 2e-28
 Identities = 71/182 (39%), Positives = 103/182 (56%), Gaps = 4/182 (2%)

>gb|AAP08603.1| (AE017003) hydrolase (HAD superfamily) [Bacillus cereus ATCC 14579]
          Length = 200

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 59/145 (40%), Positives = 83/145 (57%), Gaps = 5/145 (3%)

Structural Features:
COG1896, COG1896, Predicted hydrolases of HD superfamily 
CD-Length = 193 residues,  97.4% aligned
Score =  118 bits (297), Expect = 4e-28
Identities = 62/189 (32%), Positives = 85/189 (44%), Gaps = 8/189 (4%)
Genomic Context:
Comment:
ReferenceID:7980
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25123
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37046
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3989_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3989

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6226 PA1878_tr translation of PA1878 192 98.43 98.95 0 971.0
172410 gb|AAG05267.1|AE004614_1 (AE004614) hypothetical protein PA1878 [Pseudomonas aeruginosa PAO1] 192 98.43 98.95 0 971.0
172411 emb|CAE25839.1| (BX572594) Metal dependent phosphohydrolase [Rhodopseudomonas palustris CGA009] 197 53.80 68.52 5 551.0
GC ORFID: 46991How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1878Glimmer Score:
Start: 1370642Stop: 1370064
Length: 579
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1878 translation of PA1878Homolog Bit Score 378.0
Other Homologs: t_PA1878 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCCTCGAACTGCTGAGCAACCGCCTCGAATTCCTCCGCGAAGCCGAACGCCTGAAAGACGTCCTGCGC
TCCGCGCACACCTCCTCCGGCCGCCCGGAAAGCACCGCCGAACATAGCTGGCGGCTGTGCCTGATGGCACTG
GCCTTCGAGGACCAACTGGCCGGCCTGGACCTCGGCAAGGTTCTGCGCATGTGCGTGGTCCACGACCTCGGC
GAAGCGATCCACGGCGACATCCCCGCCGTCGAGCAAGCCGCGCACCCGGACAAGGGCGAACAGGAACGCGCC
GACCTGTTGCAGCTGACCCGTCATCTGGACACGCCGCTGCGCGATCGCCTGCTCGCCCTGTGGGACGAATAC
GAGCGCGGCGAGACCGCCGAAGCCCTGGCAGTGAAAGCGCTGGACAAGCTGGAAACCCTGCTCCAGCACACC
CAGGGCGACAATCCGGCGGACTTCGACTATGCCTTCAACCTCGACTACGGCCGTCGCTATACCGACCGCGCA
CCGCTGTTCAAGACCCTGCGCGAGTTACTCGACGCCAGGACCCGACAGCGCCTCGCAGCTCGGCGCGACGCC
TAG