ViewGene
Locus Name:
GeneID:
Location:

GeneID:3988
TrivialName: PA14_05290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05290
PAO1 Ortholog Locus:PA0405
Sequence Length:570
Protein Length:189
Start: 462080
Stop: 461511
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03794.1|AE004477_11 (AE004477) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 188/189 (99%), Positives = 188/189 (99%)
Sequence:
ATGAAACAGAGCAGCCCAACCTACCTCAAGCATCATTTCCTGATCGCCATGCCGCACATGGCCGACCCCAAT
TTCGCCCAGACCGTGACCTACCTGGTCGAACACAACGAGCAGGGCGCCATGGGCCTGGTGATCAACCGTCCC
AGCGGCCTCAACCTGGCGGAAGTCCTCGAACAGCTCAAGCCGGACGCCCTGCCGCCGGCGCGCTGCCAGCAC
ATCGACATCTACAACGGCGGCCCGGTGCAGACCGACCGCGGCTTCGTCCTCCACCCCAGCGGCCTGAGCTAC
CAGTCGACCCTGGAACTGGGCGAGCTGGCGATGTCCACCTCGCAGGACGTGCTGTTCGCCATCGCCGCCGGC
ACCGGCCCGGAAAAGAGCCTGATCAGCCTCGGCTATGCCGGCTGGGAAGCCGGCCAGCTGGAGGCCGAGCTG
AGCGACAACGCCTGGCTGACCTGCCCGGCGGACCCGGCGATCCTCTTCGACCTGCCGGCCGAGGAGCGCCTC
AGCGCCGCCGCCGCGCGCCTGGGCGTCAACCTCAGCCTGCTCACCGCCCAGGCCGGTCACGCCTGA
Translation:
MKQSSPTYLKHHFLIAMPHMADPNFAQTVTYLVEHNEQGAMGLVINRPSGLNLAEVLEQLKPDALPPARCQH
IDIYNGGPVQTDRGFVLHPSGLSYQSTLELGELAMSTSQDVLFAIAAGTGPEKSLISLGYAGWEAGQLEAEL
SDNAWLTCPADPAILFDLPAEERLSAAAARLGVNLSLLTAQAGHA*
AnnotationID:3995GeneID:3988
AnnotatorUID: diggins
Modification Date/Time: 2004-08-09 20:08:26
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional activator of alginate synthesis
Cell Localization:()
Synonyms:algH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG15555.1| (AY007523) AlgH [Pseudomonas fluorescens]
          Length = 189

 Score =  293 bits (750), Expect = 4e-79
 Identities = 142/189 (75%), Positives = 162/189 (85%)

>gb|AAN70561.1|AE016699_2 (AE016792) alginate biosynthesis nucleoside diphosphate kinase
           regulator AlgH [Pseudomonas putida KT2440]
          Length = 189

 Score =  274 bits (700), Expect = 2e-73
 Identities = 130/189 (68%), Positives = 158/189 (83%)

>gb|AAM42020.1| (AE012388) transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 188

 Score =  173 bits (439), Expect = 4e-43
 Identities = 86/185 (46%), Positives = 127/185 (68%), Gaps = 2/185 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7978




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25121




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33729




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3988_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3988
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6225
                           PA0405_tr
                           translation of PA0405
                           189
                           99.47
                           99.47
                           0
                           972.0
     

     
     
172364
                           gb|AAG03794.1|AE004477_11
                           (AE004477) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           189
                           99.47
                           99.47
                           0
                           972.0
     

     
     
172365
                           gb|AAD52846.1|AF137022_1
                           (AF137022) AlgH [Pseudomonas aeruginosa]
                           189
                           99.47
                           99.47
                           0
                           972.0
     

     
     
172366
                           gb|AAG15555.1|
                           (AY007523) AlgH [Pseudomonas fluorescens]
                           189
                           75.13
                           85.71
                           0
                           750.0
     

     
     
172367
                           gb|AAN70561.1|AE016699_2
                           (AE016792) alginate biosynthesis nucleoside diphosphate kinase regulator AlgH [Pseudomonas putida KT2440]
                           189
                           68.78
                           83.59
                           0
                           700.0
     

     






      

          
GC ORFID: 46990How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0405Glimmer Score: 

          
Start: 6263422Stop: 6262853

          
Length: 570


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0405 translation of PA0405Homolog Bit Score 379.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3711 (ORF: BLASTX 273.0), t_PA0405 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACAGAGCAGCCCAACCTACCTCAAGCATCATTTCCTGATCGCCATGCCGCACATGGCCGACCCCAAT 
TTCGCCCAGACCGTGACCTACCTGGTCGAACACAACGAGCAGGGCGCCATGGGCCTGGTGATCAACCGTCCC 
AGCGGCCTCAACCTGGCGGAAGTCCTCGAACAGCTCAAGCCGGACGCCCTGCCGCCGGCGCGCTGCCAGCAC 
ATCGACATCTACAACGGCGGCCCGGTGCAGACCGACCGCGGCTTCGTCCTCCACCCCAGCGGCCTGAGCTAC 
CAGTCGACCCTGGAACTGGGCGAGCTGGCGATGTCCACCTCGCAGGACGTGCTGTTCGCCATCGCCGCCGGC 
ACCGGCCCGGAAAAGAGCCTGATCAGCCTCGGCTATGCCGGCTGGGAAGCCGGCCAGCTGGAGGCCGAGCTG 
AGCGACAACGCCTGGCTGACCTGCCCGGCGGACCCGGCGATCCTCTTCGACCTGCCGGCCGAGGAGCGCCTC 
AGCGCCGCCGCCGCGCGCCTGGGCGTCAACCTCAGCCTGCTCACCGCCCAGGCCGGTCACGCCTGA