ViewGene

Locus Name:
GeneID:
Location:

GeneID:3987
TrivialName: PA14_56510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56510
PAO1 Ortholog Locus:PA4345
Sequence Length:591
Protein Length:196
Start: 5038795
Stop: 5038205
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07733.1|AE004851_1 (AE004851) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 195/196 (99%), Positives = 196/196 (100%)
Sequence:
ATGCCTGTTGTATTGTGTGTCCTGTTGTTGCTCCTCAGCCCGCTGCTGTCGGCGGCGGAATGGCAACTGGAG
CCGGATTACTCGCGGATCAGCTTCGTTTCCGTGAAACGCGCGAAGATGGCCGAGGTGCAGCGCTTCGACCGT
CTCAGCGGCCAGATCGACAAGCAGGGCGTCGCGCGCATCGTGGTGCCGCTGGGCACCCTGGACAGCGGCCTG
GCCCTGCGCGACGAGCGAATGAAGGACAACTTCTTCGAAACCTCGCGCTTCCCCGAGGCCACCGTGGAGAGC
CGCCTGGACATGGCCGGCTTCGACGACCTGCGGGTCGGTCAGTCGCGGGTCGAGAAGCTCGACTTCACCCTC
GACCTGCACGGCCAGCAGCGCCGCCTGAAGGCCGACGTGCTGGTCACCCGCCAGGGCGAAGGGCTGGTCCAG
GTGGCGACCCTGGAGCCGGTGCTGCTGAAGCTGCTCGACTTCGACCTGGAAGAGAAGCTCAAGCCCTTGAAG
GACATGGCCAATATTCCCTCGATCACTCCCGAGGTACCGGTGTTCGCCGTGCTGAACTTCCGCGAAGTGCCG
CCGGAACAGTTCTGA
Translation:
MPVVLCVLLLLLSPLLSAAEWQLEPDYSRISFVSVKRAKMAEVQRFDRLSGQIDKQGVARIVVPLGTLDSGL
ALRDERMKDNFFETSRFPEATVESRLDMAGFDDLRVGQSRVEKLDFTLDLHGQQRRLKADVLVTRQGEGLVQ
VATLEPVLLKLLDFDLEEKLKPLKDMANIPSITPEVPVFAVLNFREVPPEQF*
AnnotationID:3994GeneID:3987
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 17:05:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4345
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04264
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam04264, YceI, YceI like family. E. coli YceI is a base-induced 
periplasmic protein. 
CD-Length = 172 residues,  99.4% aligned
Score =  109 bits (275), Expect = 4e-25
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 26/185 (14%)
Genomic Context:
Comment:
ReferenceID:7976
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17097
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3987_cdd.html
URL:
ReferenceID:25119
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3987

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6224 PA4345_tr translation of PA4345 196 99.48 99.99 0 973.0
172362 gb|AAG07733.1|AE004851_1 (AE004851) hypothetical protein PA4345 [Pseudomonas aeruginosa PAO1] 196 99.48 99.99 0 973.0
172363 gb|AAN66516.1|AE016280_8 (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440] 199 39.19 56.78 9 340.0
GC ORFID: 46989How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4345Glimmer Score:
Start: 4302471Stop: 4301881
Length: 591
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4345 translation of PA4345Homolog Bit Score 379.0
Other Homologs: t_PA4345 (ORF: GLIMMER)
GC ORF Sequence
ATGCCTGTTGTATTGTGTGTCCTGTTGTTGCTCCTCAGCCCGCTGCTGTCGGCGGCGGAATGGCAACTGGAG
CCGGATTACTCGCGGATCAGCTTCGTTTCCGTGAAACGCGCGAAGATGGCCGAGGTGCAGCGCTTCGACCGT
CTCAGCGGCCAGATCGACAAGCAGGGCGTCGCGCGCATCGTGGTGCCGCTGGGCACCCTGGACAGCGGCCTG
GCCCTGCGCGACGAGCGAATGAAGGACAACTTCTTCGAAACCTCGCGCTTCCCCGAGGCCACCGTGGAGAGC
CGCCTGGACATGGCCGGCTTCGACGACCTGCGGGTCGGTCAGTCGCGGGTCGAGAAGCTCGACTTCACCCTC
GACCTGCACGGCCAGCAGCGCCGCCTGAAGGCCGACGTGCTGGTCACCCGCCAGGGCGAAGGGCTGGTCCAG
GTGGCGACCCTGGAGCCGGTGCTGCTGAAGCTGCTCGACTTCGACCTGGAAGAGAAGCTCAAGCCCTTGAAG
GACATGGCCAATATTCCCTCGATCACTCCCGAGGTACCGGTGTTCGCCGTGCTGAACTTCCGCGAAGTGCCG
CCGGAACAGTTCTGA