ViewGene
Locus Name:
GeneID:
Location:

GeneID:3986
TrivialName: PA14_19530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19530
PAO1 Ortholog Locus:PA3446
Sequence Length:594
Protein Length:197
Start: 1688537
Stop: 1689130
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06834.1|AE004765_7 (AE004765) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGCTCGTCGTTTCCATCGCCGGAAGTCCCAGCGTACGCTCCCGCTCCGGGGTGTTGCTGGAGCGTGCCAGG
GACTGGCTGAGCCGTCGCGGCGTCGAGGTGGCCAGCCACCAGGTGCTGGATTTTCCCGCCGAGGACCTGCTG
CGTGCCCGCCTCGACAGTCCGCCGGTACTGGCGCTGGCCGAGCAGATCGGCCGCGCCGACGGCCTGCTGGTC
GCCACCCCGGTGTACAAGGCCTCGTTTTCCGGCGCGCTGAAGGTCCTGCTCGACCTGTTGCCCGAGCGCGCC
CTGGAGCACAAGGTGGTGCTGCCGTTCGCCACCGGCGGCAGCAGCGCGCACATGCTGGCCGTGGACTACGCA
TTGAAGCCGGTACTGGCCGCGCTCAAGGCCCAGGAGGTGCTGCACGGCGTATTCGCCGTGGACAAGCAGATC
GCCTACGCCACCGAGAGCGACCCGGCGCGCCTGGAGCCGGTCCTCGAGCAGCGCCTGGAAAACGCCCTGGAA
ACCTTCCACCTGGCCCTCTCGCGACGGCCGCAGCCGATCGACCCGCAGTTGCTCAACGAGCGCCTGGTGAAC
GCCCGCTGGAGCATCTGA
Translation:
MLVVSIAGSPSVRSRSGVLLERARDWLSRRGVEVASHQVLDFPAEDLLRARLDSPPVLALAEQIGRADGLLV
ATPVYKASFSGALKVLLDLLPERALEHKVVLPFATGGSSAHMLAVDYALKPVLAALKAQEVLHGVFAVDKQI
AYATESDPARLEPVLEQRLENALETFHLALSRRPQPIDPQLLNERLVNARWSI*
AnnotationID:3993GeneID:3986
AnnotatorUID: diggins
Modification Date/Time: 2005-08-21 09:09:19
Gene Name:
Confidence Code:3
GeneProduct:putative NADH-dependent FMN reductase
Cell Localization:()
Synonyms:ssuE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03358
Secondary Functional Category(ies):
EC Number:1.5.1.29
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65868.1|AE016215_3 (AE016774) NADH-dependent FMN reductase [Pseudomonas putida KT2440]
          Length = 197

 Score =  277 bits (709), Expect = 2e-74
 Identities = 140/197 (71%), Positives = 164/197 (83%)

>emb|CAB40389.1| (AJ237695) NADP(H):FMN oxidoreductase [Escherichia coli]
          Length = 191

 Score =  191 bits (485), Expect = 2e-48
 Identities = 110/189 (58%), Positives = 134/189 (70%), Gaps = 3/189 (1%)








 
Structural Features:
pfam03358, FMN_red, NADPH-dependent FMN reductase.
CD-Length = 173 residues,  97.1% aligned
Score =  103 bits (259), Expect = 1e-23
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 9/173 (5%)







   
Genomic Context:






   
Comment:
another possible gene name: ycbP


















    ReferenceID:7974




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25117




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38099




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3986_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3986
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6223
                           PA3446_tr
                           translation of PA3446
                           197
                           99.99
                           99.99
                           0
                           972.0
     

     
     
172341
                           gb|AAG06834.1|AE004765_7
                           (AE004765) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           197
                           99.99
                           99.99
                           0
                           972.0
     

     
     
172342
                           gb|AAN65868.1|AE016215_3
                           (AE016774) NADH-dependent FMN reductase [Pseudomonas putida KT2440]
                           197
                           71.06
                           83.24
                           0
                           709.0
     

     
     
172344
                           dbj|BAC00971.1|
                           (AB086390) NADPH-dependent FMN reductase [Pseudomonas putida]
                           197
                           71.06
                           82.23
                           0
                           702.0
     

     
     
172343
                           gb|AAC31903.1|
                           (AF075709) NADH-dependent FMN reductase [Pseudomonas putida]
                           200
                           71.00
                           81.50
                           3
                           707.0
     

     






      

          
GC ORFID: 46988How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3446Glimmer Score: 

          
Start: 3265395Stop: 3264802

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3446 translation of PA3446Homolog Bit Score 379.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8106 (ORF: BLASTX 218.0), t_PA3446 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGTCGTTTCCATCGCCGGAAGTCCCAGCGTACGCTCCCGCTCCGGGGTGTTGCTGGAGCGTGCCAGG 
GACTGGCTGAGCCGTCGCGGCGTCGAGGTGGCCAGCCACCAGGTGCTGGATTTTCCCGCCGAGGACCTGCTG 
CGTGCCCGCCTCGACAGTCCGCCGGTACTGGCGCTGGCCGAGCAGATCGGCCGCGCCGACGGCCTGCTGGTC 
GCCACCCCGGTGTACAAGGCCTCGTTTTCCGGCGCGCTGAAGGTCCTGCTCGACCTGTTGCCCGAGCGCGCC 
CTGGAGCACAAGGTGGTGCTGCCGTTCGCCACCGGCGGCAGCAGCGCGCACATGCTGGCCGTGGACTACGCA 
TTGAAGCCGGTACTGGCCGCGCTCAAGGCCCAGGAGGTGCTGCACGGCGTATTCGCCGTGGACAAGCAGATC 
GCCTACGCCACCGAGAGCGACCCGGCGCGCCTGGAGCCGGTCCTCGAGCAGCGCCTGGAAAACGCCCTGGAA 
ACCTTCCACCTGGCCCTCTCGCGACGGCCGCAGCCGATCGACCCGCAGTTGCTCAACGAGCGCCTGGTGAAC 
GCCCGCTGGAGCATCTGA