ViewGene
Locus Name:
GeneID:
Location:

GeneID:3984
TrivialName: PA14_36350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36350
PAO1 Ortholog Locus:PA2189
Sequence Length:555
Protein Length:184
Start: 3238539
Stop: 3237985
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05577.1|AE004645_11 (AE004645) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 181/184 (98%), Positives = 183/184 (99%)
Sequence:
ATGTCCAAGCAGCACATCATCCATTTCACCGGGCCGATCAATTCGTCCACCTGCGGCAATCTGATCAACACT
TGCGCCAAGATCCTGCAACAGGAGGCCGAGGAGTTGCGGATCAACATCGCCACCATGGGCGGGGAATGCAGC
TACGGCTTTACCCTGTACAACTTCCTGCGCGCGCTGCCGGTGCCGATACATACCCACAACCTGGGTACCGTC
GAGTCGATGGGCAACATCCTGTTCCTCGCCGGCGAGCGACGCAGCGCCAGTGCCCACAGCAAGTTCCTGTTC
CATCCTTTCCACTGGACCCTGCATGGCGCGGTGGACCATGCGCGGATGGCGGAATATGCGATGAGCCTCGAC
TACGACCTGGAGCTTTACGCCCGGATCGTCGCCGAGAACACCCGTGATGCGCCGGAACGCCTGGACATCCCG
AGCTACCTGATGGCCTATCCGCGCATCCTCGGTCCGGAAGACGCCCTGGCTTGCGGACTGATCCATACGGTG
GACGATTCGCCTATACCCGCTTCCGCCTGCCAGTGGAGTATCCATTCCTAG
Translation:
MSKQHIIHFTGPINSSTCGNLINTCAKILQQEAEELRINIATMGGECSYGFTLYNFLRALPVPIHTHNLGTV
ESMGNILFLAGERRSASAHSKFLFHPFHWTLHGAVDHARMAEYAMSLDYDLELYARIVAENTRDAPERLDIP
SYLMAYPRILGPEDALACGLIHTVDDSPIPASACQWSIHS*
AnnotationID:3991GeneID:3984
AnnotatorUID: diggins
Modification Date/Time: 2006-01-17 20:08:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2189
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0740
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68874.1|AE016519_7 (AE016786) clp protease, putative [Pseudomonas putida KT2440]
          Length = 198

 Score =  297 bits (761), Expect = 2e-80
 Identities = 138/181 (76%), Positives = 159/181 (87%)






 
Structural Features:
COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases 
[Posttranslational modification, protein turnover, chaperones / 
Intracellular trafficking and secretion].
CD-Length = 200 residues,  88.5% aligned
Score =  139 bits (351), Expect = 2e-34
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 14/185 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7970




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25113




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3984
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6221
                           PA2189_tr
                           translation of PA2189
                           184
                           98.36
                           99.45
                           0
                           972.0
     

     
     
172337
                           gb|AAG05577.1|AE004645_11
                           (AE004645) hypothetical protein PA2189 [Pseudomonas aeruginosa PAO1]
                           184
                           98.36
                           99.45
                           0
                           972.0
     

     
     
172339
                           gb|AAP31400.1|
                           (AF029714) hypothetical protein [Pseudomonas putida]
                           184
                           75.54
                           86.41
                           1
                           757.0
     

     
     
172338
                           gb|AAN68874.1|AE016519_7
                           (AE016786) clp protease, putative [Pseudomonas putida KT2440]
                           198
                           69.69
                           80.30
                           14
                           758.0
     

     






      

          
GC ORFID: 46986How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2189Glimmer Score: 

          
Start: 1715377Stop: 1715931

          
Length: 555


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2189 translation of PA2189Homolog Bit Score 379.0

          
Other Homologs:  t_PA2189 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAAGCAGCACATCATCCATTTCACCGGGCCGATCAATTCGTCCACCTGCGGCAATCTGATCAACACT 
TGCGCCAAGATCCTGCAACAGGAGGCCGAGGAGTTGCGGATCAACATCGCCACCATGGGCGGGGAATGCAGC 
TACGGCTTTACCCTGTACAACTTCCTGCGCGCGCTGCCGGTGCCGATACATACCCACAACCTGGGTACCGTC 
GAGTCGATGGGCAACATCCTGTTCCTCGCCGGCGAGCGACGCAGCGCCAGTGCCCACAGCAAGTTCCTGTTC 
CATCCTTTCCACTGGACCCTGCATGGCGCGGTGGACCATGCGCGGATGGCGGAATATGCGATGAGCCTCGAC 
TACGACCTGGAGCTTTACGCCCGGATCGTCGCCGAGAACACCCGTGATGCGCCGGAACGCCTGGACATCCCG 
AGCTACCTGATGGCCTATCCGCGCATCCTCGGTCCGGAAGACGCCCTGGCTTGCGGACTGATCCATACGGTG 
GACGATTCGCCTATACCCGCTTCCGCCTGCCAGTGGAGTATCCATTCCTAG