ViewGene
Locus Name:
GeneID:
Location:

GeneID:3983
TrivialName: PA14_44130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44130
PAO1 Ortholog Locus:PA1575
Sequence Length:552
Protein Length:183
Start: 3927801
Stop: 3928352
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04964.1|AE004586_2 (AE004586) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 182/183 (99%), Positives = 183/183 (100%)
Sequence:
ATGCCTCACTGGCTGGTAATCGATCTGGAGGCCACTACCGCGGAAGGCGGCTGGCCCCTGGAGGAAATGGAA
ATCATCGAGATCGGCGCCACCCTGGTCGCCGCCGCGGACGCCCGCGAACTGGATCACTTCCAGCGTTTCGTA
CGGCCGGTCAGGCGGCCGCTGCTGACCCACTTCTGCCGCGACCTCACGCATATCAGCCAGGCCAACGTCGAT
GGCGCCGCCCATCTCGACACGGTCTGGGAAGCCTTCGAGCGCTGGCTCGCCCAGCATCGTCCGCGACTGGCC
GGCTGGGCCAGCTGGGGCGACTACGACCGCCGCCAGCTGGAGCAGGAATGGCGCCAGCACGGGCTGACCAGC
CAGCTCAGCGAAGTGCCGCACGTCAATCTCAAGCAACGCTTCGGCGAAGTCCGCCAGCTGCCCCGCCCGGTC
GGCCTGAACGCGGCCCTGCAACTGGCCGGGATGAGTTTCCAGGGCCAGCAGCACCGCGCCCTGGAGGATGCC
CGCAATACCGCACGGCTGCTGCCGCTGGTATTGCCGGTGGAGCATTGA
Translation:
MPHWLVIDLEATTAEGGWPLEEMEIIEIGATLVAAADARELDHFQRFVRPVRRPLLTHFCRDLTHISQANVD
GAAHLDTVWEAFERWLAQHRPRLAGWASWGDYDRRQLEQEWRQHGLTSQLSEVPHVNLKQRFGEVRQLPRPV
GLNAALQLAGMSFQGQQHRALEDARNTARLLPLVLPVEH*
AnnotationID:3990GeneID:3983
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 13:01:12
Gene Name:
Confidence Code:3
GeneProduct:putative exonuclease
Cell Localization:()
Synonyms:PA1575
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5018
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55541.1| (AE016863) exonuclease, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 180

 Score =  295 bits (755), Expect = 9e-80
 Identities = 138/180 (76%), Positives = 155/180 (86%), Gaps = 1/180 (0%)

>gb|AAN69827.1|AE016622_4 (AE016790) exonuclease [Pseudomonas putida KT2440]
          Length = 183

 Score =  263 bits (672), Expect = 4e-70
 Identities = 126/180 (70%), Positives = 143/180 (79%), Gaps = 1/180 (0%)






 
Structural Features:
COG5018, KapD, Inhibitor of the KinA pathway to sporulation, predicted exonuclease
CD-Length = 210 residues,  87.6% aligned
Score =  285 bits (731), Expect = 2e-78
Identities = 76/184 (41%), Positives = 99/184 (53%), Gaps = 1/184 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7968




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25111




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37243




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3983_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3983
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6220
                           PA1575_tr
                           translation of PA1575
                           183
                           99.45
                           99.99
                           0
                           972.0
     

     
     
172334
                           gb|AAG04964.1|AE004586_2
                           (AE004586) hypothetical protein PA1575 [Pseudomonas aeruginosa PAO1]
                           183
                           99.45
                           99.99
                           0
                           972.0
     

     
     
172335
                           gb|AAO55541.1|
                           (AE016863) exonuclease, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           183
                           75.40
                           84.69
                           3
                           754.0
     

     
     
172336
                           gb|AAN69827.1|AE016622_4
                           (AE016790) exonuclease [Pseudomonas putida KT2440]
                           184
                           68.47
                           77.71
                           2
                           672.0
     

     






      

          
GC ORFID: 46985How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1575Glimmer Score: 

          
Start: 1026108Stop: 1025557

          
Length: 552


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1575 translation of PA1575Homolog Bit Score 379.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene572 (ORF: BLASTX 291.0), t_PA1575 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTCACTGGCTGGTAATCGATCTGGAGGCCACTACCGCGGAAGGCGGCTGGCCCCTGGAGGAAATGGAA 
ATCATCGAGATCGGCGCCACCCTGGTCGCCGCCGCGGACGCCCGCGAACTGGATCACTTCCAGCGTTTCGTA 
CGGCCGGTCAGGCGGCCGCTGCTGACCCACTTCTGCCGCGACCTCACGCATATCAGCCAGGCCAACGTCGAT 
GGCGCCGCCCATCTCGACACGGTCTGGGAAGCCTTCGAGCGCTGGCTCGCCCAGCATCGTCCGCGACTGGCC 
GGCTGGGCCAGCTGGGGCGACTACGACCGCCGCCAGCTGGAGCAGGAATGGCGCCAGCACGGGCTGACCAGC 
CAGCTCAGCGAAGTGCCGCACGTCAATCTCAAGCAACGCTTCGGCGAAGTCCGCCAGCTGCCCCGCCCGGTC 
GGCCTGAACGCGGCCCTGCAACTGGCCGGGATGAGTTTCCAGGGCCAGCAGCACCGCGCCCTGGAGGATGCC 
CGCAATACCGCACGGCTGCTGCCGCTGGTATTGCCGGTGGAGCATTGA