ViewGene
Locus Name:
GeneID:
Location:

GeneID:3982
TrivialName: PA14_49880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49880
PAO1 Ortholog Locus:PA1121
Sequence Length:573
Protein Length:190
Start: 4434859
Stop: 4435431
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04510.1|AE004542_6 (AE004542) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 188/190 (98%), Positives = 189/190 (99%)
Sequence:
TTGCCTTCGTTGCCCACCTTGCAGCCCCTCGACCTCTACAGGCGCACCCTGGCCTGCCTGGTCCTGGCGGTT
TCCTGCCTGGGCGGCGGAGGCCTGTGGGCGGACGACGCACGGACGTCGGTCGAGCAACGCAGCAACGCGGTC
AGCCAGGTTCTGCTGGGCATATTCAGCTACGTGCGCTGGCCGAAGGAACCGGCGGTTCTGCAACTCTGCGTG
GTCGGCCCGACCGAGTACGCCGACGGTCTGCTCCGCGGCATGGTGCAGGCCAATGGCAGGCGCGTGCATGCG
GAACGCCGCGCGGTGGACAACCCGGACCTCGGCACGCTCTGCAACGTGATCTACCTCGGAGTGGTCGACGAG
CGCGAGCGCCAGCAGGTGTTCCACAGCCTGGCCGGGCATCCGGTCCTGTCCATCAGCGAGCGTGGCACCGAA
TGCAGCGTCGGCAGCATGTTCTGCCTCAACGTCGGCGGTCCGCGCATCACCTTCGAGGCCAATCTCGACTCC
ATCGCCCGCAGCGGCGTACGCGTGCACCCGAGCGTATTGAAACTGGCAAGGCGGCAGGCCACTCCGTGA
Translation:
MPSLPTLQPLDLYRRTLACLVLAVSCLGGGGLWADDARTSVEQRSNAVSQVLLGIFSYVRWPKEPAVLQLCV
VGPTEYADGLLRGMVQANGRRVHAERRAVDNPDLGTLCNVIYLGVVDERERQQVFHSLAGHPVLSISERGTE
CSVGSMFCLNVGGPRITFEANLDSIARSGVRVHPSVLKLARRQATP*
AnnotationID:3989GeneID:3982
AnnotatorUID: danlee
Modification Date/Time: 2006-03-16 12:12:17
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1121
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14982




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25109




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3982
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6219
                           PA1121_tr
                           translation of PA1121
                           190
                           98.94
                           99.47
                           0
                           973.0
     

     
     
172329
                           gb|AAG04510.1|AE004542_6
                           (AE004542) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           190
                           98.42
                           99.47
                           0
                           971.0
     

     
     
172330
                           gb|AAL79574.1|
                           (AY078390) unknown [Pseudomonas syringae]
                           205
                           48.29
                           63.90
                           22
                           476.0
     

     
     
172331
                           gb|AAN70244.1|AE016663_12
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           197
                           46.70
                           65.98
                           16
                           468.0
     

     
     
172332
                           gb|AAM87277.1|AE013976_5
                           (AE013976) hypothetical protein [Yersinia pestis KIM]
                           229
                           31.87
                           50.21
                           61
                           353.0
     

     






      

          
GC ORFID: 46984How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1121Glimmer Score: 

          
Start: 519049Stop: 518477

          
Length: 573


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1121 translation of PA1121Homolog Bit Score 379.0

          
Other Homologs:  t_PA1121 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCCTTCGTTGCCCACCTTGCAGCCCCTCGACCTCTACAGGCGCACCCTGGCCTGCCTGGTCCTGGCGGTT 
TCCTGCCTGGGCGGCGGAGGCCTGTGGGCGGACGACGCACGGACGTCGGTCGAGCAACGCAGCAACGCGGTC 
AGCCAGGTTCTGCTGGGCATATTCAGCTACGTGCGCTGGCCGAAGGAACCGGCGGTTCTGCAACTCTGCGTG 
GTCGGCCCGACCGAGTACGCCGACGGTCTGCTCCGCGGCATGGTGCAGGCCAATGGCAGGCGCGTGCATGCG 
GAACGCCGCGCGGTGGACAACCCGGACCTCGGCACGCTCTGCAACGTGATCTACCTCGGAGTGGTCGACGAG 
CGCGAGCGCCAGCAGGTGTTCCACAGCCTGGCCGGGCATCCGGTCCTGTCCATCAGCGAGCGTGGCACCGAA 
TGCAGCGTCGGCAGCATGTTCTGCCTCAACGTCGGCGGTCCGCGCATCACCTTCGAGGCCAATCTCGACTCC 
ATCGCCCGCAGCGGCGTACGCGTGCACCCGAGCGTATTGAAACTGGCAAGGCGGCAGGCCACTCCGTGA