ViewGene
Locus Name:
GeneID:
Location:

GeneID:3981
TrivialName: PA14_58910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58910
PAO1 Ortholog Locus:
Sequence Length:867
Protein Length:288
Start: 5251580
Stop: 5252446
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84239.1| (AY273869) chromosome partitioning protein [Pseudomonas aeruginosa]
Identities = 277/277 (100%), Positives = 277/277 (100%)
Sequence:
ATGAATGCGAAAGCGACTTCGGTTGTATCCACCAAGGGTGGTGTAGGAAAATCCACCACCGCCGCCAACCTC
GGTGCATTTTGCGCCGATGCAGGCATACGAACCCTCCTCATCGATCTGGACCCCGTCCAGCCCTCCCTATCC
TCGTACTACGAGCTGCCGGAAGTTGCCCAGGGCGGCATTTACGACCTGCTCGCCGCCAACATAACGGACCCG
GCGAGGATCATCTCCAGGACGATTATCCCCAATCTGGACGTCGTGATTTCCAACGACCAGAACAATCAGCTC
AACAACCTACTGCTCCAGGCGCCCGATGGCCGGCTACGCCTGGCGAACCTGATGCCCGCTCTGAAAGAAGGC
TACGACCTGGTGCTGATCGACACCCAGGGTGCGCGCTCAGCTTTGCTCGAAATGGTTGTGCTTGCATCGGAC
CTGGTTGTTTCCCCCCTCCAACCCAACATGCTTACCGCCCGTGAGTTCAACCGCGGCACCATGCAAATGCTC
GACGGCCTACGCCCCTATGAGCGTCTCGGCATGCGGATCCCCAATGTTCAGATCGTCATCAACTGCCTGGAC
CAGACCAATGACTCCCGGGCAATTCACGAGAATGTGCGTGCCATCTTCGATGAGCATCAGGACATTTCTGTG
CTCGAAACGACTGTCCCGGATGCCGTCGTGTTTCGCAACGCAGCATCGCGCGGGCTACCAGCGCACCGCCTC
GAAACGCGGCAACCCTCCAATCGCACATCAGCGCCCGCGCTGGAAATCATTCGAAACCTGGCCATCGAGGTC
TTTCCCGAGTGGACTGACCGCTTCCTGGCGCTGACGCCGGAGGCGGTTGCAGCACTGGTCAAGGGAGGGCGC
TGA
Translation:
MNAKATSVVSTKGGVGKSTTAANLGAFCADAGIRTLLIDLDPVQPSLSSYYELPEVAQGGIYDLLAANITDP
ARIISRTIIPNLDVVISNDQNNQLNNLLLQAPDGRLRLANLMPALKEGYDLVLIDTQGARSALLEMVVLASD
LVVSPLQPNMLTAREFNRGTMQMLDGLRPYERLGMRIPNVQIVINCLDQTNDSRAIHENVRAIFDEHQDISV
LETTVPDAVVFRNAASRGLPAHRLETRQPSNRTSAPALEIIRNLAIEVFPEWTDRFLALTPEAVAALVKGGR
*
AnnotationID:3988GeneID:3981
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:43
Gene Name:RL115
Confidence Code:3
GeneProduct:chromosome partitioning related protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1192,COG0455
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
soj (pseudomonas aeruginosa strain C, plasmid pKLC102)






 
Structural Features:
COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].
        CD-Length = 259 residues,  98.1% aligned
        Score =  129 bits (325), Expect = 4e-31






   
Genomic Context:






   
Comment:


















    ReferenceID:7964




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25107




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3981
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
172314
                           gb|AAP84239.1|
                           (AY273869) chromosome partitioning protein [Pseudomonas aeruginosa]
                           317
                           88.01
                           88.01
                           37
                           1386.0
     

     
     
172315
                           gb|AAG02083.1|AF285416_1
                           (AF285416) SOJ-like protein [Pseudomonas aeruginosa]
                           294
                           59.18
                           61.22
                           113
                           873.0
     

     
     
172316
                           gb|AAF84593.1|AE004000_10
                           (AE004000) chromosome partitioning related protein [Xylella fastidiosa 9a5c]
                           294
                           52.38
                           68.36
                           9
                           749.0
     

     
     
172318
                           emb|CAE92955.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           303
                           50.49
                           64.68
                           27
                           735.0
     

     
     
172319
                           emb|CAD60665.1|
                           (AJ536665) hypothetical protein [Pseudomonas sp. B13]
                           303
                           50.49
                           64.68
                           27
                           735.0
     

     






      

          
GC ORFID: 46983How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold10_revised_gene1565Glimmer Score: 

          
Start: 4515259Stop: 4516125

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold10_revised_gene1565 related to: gi|15838385|ref|NP_299073.1| (NC_002488) chromosome partitioning related protein [Xylella fastidiosa 9a5c] pir||B82639 chromosome partitioning related protein XF1785 [imported] - Xylella fastidiosa (strHomolog Bit Score 380.0

          
Other Homologs:  t_RL115 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGCGAAAGCGACTTCGGTTGTATCCACCAAGGGTGGTGTAGGAAAATCCACCACCGCCGCCAACCTC 
GGTGCATTTTGCGCCGATGCAGGCATACGAACCCTCCTCATCGATCTGGACCCCGTCCAGCCCTCCCTATCC 
TCGTACTACGAGCTGCCGGAAGTTGCCCAGGGCGGCATTTACGACCTGCTCGCCGCCAACATAACGGACCCG 
GCGAGGATCATCTCCAGGACGATTATCCCCAATCTGGACGTCGTGATTTCCAACGACCAGAACAATCAGCTC 
AACAACCTACTGCTCCAGGCGCCCGATGGCCGGCTACGCCTGGCGAACCTGATGCCCGCTCTGAAAGAAGGC 
TACGACCTGGTGCTGATCGACACCCAGGGTGCGCGCTCAGCTTTGCTCGAAATGGTTGTGCTTGCATCGGAC 
CTGGTTGTTTCCCCCCTCCAACCCAACATGCTTACCGCCCGTGAGTTCAACCGCGGCACCATGCAAATGCTC 
GACGGCCTACGCCCCTATGAGCGTCTCGGCATGCGGATCCCCAATGTTCAGATCGTCATCAACTGCCTGGAC 
CAGACCAATGACTCCCGGGCAATTCACGAGAATGTGCGTGCCATCTTCGATGAGCATCAGGACATTTCTGTG 
CTCGAAACGACTGTCCCGGATGCCGTCGTGTTTCGCAACGCAGCATCGCGCGGGCTACCAGCGCACCGCCTC 
GAAACGCGGCAACCCTCCAATCGCACATCAGCGCCCGCGCTGGAAATCATTCGAAACCTGGCCATCGAGGTC 
TTTCCCGAGTGGACTGACCGCTTCCTGGCGCTGACGCCGGAGGCGGTTGCAGCACTGGTCAAGGGAGGGCGC 
TGA