ViewGene
Locus Name:
GeneID:
Location:

GeneID:398
TrivialName: PA14_02220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02220
PAO1 Ortholog Locus:PA0176
Sequence Length:2040
Protein Length:679
Start: 200499
Stop: 198460
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03566.1|AE004455_7 (AE004455) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 676/679 (99%), Positives = 678/679 (99%)
Sequence:
ATGGGTCTGTTCAATGCACATGCGGTGGCGCAGCAACGCGCCGACCGGATCGCCACGCTCCTCCAGTCGTTC
GCCGACGGCCAGCTCGACACCGCCGTCGGCGAGGCCCCGGCGCCCGGCTACGAGCGTCTTTACGACAGCCTG
CGGGCGCTACAGCGGCAACTGCGCGAACAACGCGCCGAACTCCAGCAGGTGGAAAGCCTGGAGGCGGGGCTG
GCGGAGATGAGCCGCCAGCACGAAGCCGGCTGGATCGACCAGACGATTCCCGCCGAACGCCTAGAAGGCCGC
GCGGCGCGCATCGCCAAGGGCGTCAACGAACTGGTGGCCGCGCACATCGCGGTGAAGATGAAGGTGGTCAGC
GTGGTCACCGCCTACGGCCAGGGCAACTTCGAGCCGCTGATGGACCGCCTGCCGGGCAAGAAGGCGCAGATC
ACCGAAGCCATCGACGGCGTTCGCGAGCGCCTGCGCGGGGCCGCCGAGGCGACCTCGGCGCAACTGGCCACG
GCGGCCTACAACGCGCGGATCAAGAGCGCGCTGGACAACGTCTCGGCCAACGTGATGATCGCCGACAACGAC
CTCAACATCATCTACATGAACCGCACCGTCAGCGAGATGCTCGGCCGCGCCGAAGCGGATATCCGCAAGCAA
CTGCCGAACTTCGACGCCGGCCGCCTGTTGGGCGCCAACATCGACGTGTTCCACAAGAACCCGGCGCACCAG
CGGCACCTGCTGGCCAACCTCACCGGCGTGCACAAGGCCGAGCTCAACCTCGGCGGCCGGCGCTTCTCCCTC
GACGTGGTGCCAGTGTTCAACGACGCCAACGAACGCCTCGGCTCCGCCGTGCAATGGACCGACCGCACCGAG
GAACACCGCGCCGAGCAGGAAGTCTCGCAACTGGTGCAGGCGGCGGCCGCCGGCGACTTCAGCAAGCGCGTC
GAGGAGGCCGGCAAGGAAGGCTTCTTCCTCAGGCTGGCGAAGGACCTGAACAGCCTGGTGGATACCGCCGAC
CGCGGCTTGCGCGACGTCTCGCGGATGCTCGGGGCGCTGGCCCAGGGCGACCTCACCCAGCGCATCGAGGCC
GACTACCAGGGCACCTTCGGCCAGCTCAAGGACTTCTCCAACGAGACCGCGCTGAGCCTGTCGCGGATGCTC
GGGCAGATTCGCGAGGCCGCCGACACCATCAACACCGCCGCCAGCGAGATCGCCAGCGGCAACGCCGAACTG
TCGGCGCGCACCGAGCAGCAGGCGTCGAGCCTGGAGGAAACCGCCTCGAGCATGGAAGAACTGACCAGCACG
GTGAAGCTCAACGCCGAGAATGCCCGCCAGGCCAACTCGCTGGCGGCCAATGCCTCGGAAGTGGCGACCCAG
GGCGGCACCGTGGTGCAGAAGGTGGTCAGCACCATGTCCTCGATCAACGAGTCGGCGCGCAAGATCGCCGAC
ATCATCGGGGTGATCGACGGCATCGCCTTCCAGACCAACATCCTCGCCCTCAACGCCGCGGTCGAGGCAGCC
CGCGCCGGCGAGCAGGGCCGCGGCTTCGCGGTGGTCGCCGGGGAAGTGCGCACCCTCGCCCAGCGTTCCGCC
GCCGCGGCCAAGGAGATCAAGACGCTGATCTCCGACTCGGTGGACAAGGTGGAGAACGGCAACACCCTGGTG
GCCCAGGCCGGACAGACCATGAGCGACATCGTGGTAGCGATCCGCCGGGTCACCGACATCATGTCGGAGATC
GCCGCCGCCTCCGCCGAGCAGAGCACCGGCATCGAAGAGGTGAACAGCGCGGTCTCGCAGATGGACGACATG
ACCCAGCAGAACGCCGCGCTGGTGGAGGAAGCCGCGGCCGCCGCCGAGGCCATGCAGGAGCAGGCGGGCCTG
CTCAACCAGTCGGTGGCGGTGTTCAGGCTGGACACTCCGCCGAGCGTGGTCCAGCTCGCCAGCGCGCGGCCG
TCCGCGCCACGCCCCAGCGCGCCGGCGCCGCTGGCCCGCAGCGGCATGGCGCGGGCCAGCAAGGCGCGCAAG
GAAGACGGCTGGGAAGAGTTCTGA
Translation:
MGLFNAHAVAQQRADRIATLLQSFADGQLDTAVGEAPAPGYERLYDSLRALQRQLREQRAELQQVESLEAGL
AEMSRQHEAGWIDQTIPAERLEGRAARIAKGVNELVAAHIAVKMKVVSVVTAYGQGNFEPLMDRLPGKKAQI
TEAIDGVRERLRGAAEATSAQLATAAYNARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQ
LPNFDAGRLLGANIDVFHKNPAHQRHLLANLTGVHKAELNLGGRRFSLDVVPVFNDANERLGSAVQWTDRTE
EHRAEQEVSQLVQAAAAGDFSKRVEEAGKEGFFLRLAKDLNSLVDTADRGLRDVSRMLGALAQGDLTQRIEA
DYQGTFGQLKDFSNETALSLSRMLGQIREAADTINTAASEIASGNAELSARTEQQASSLEETASSMEELTST
VKLNAENARQANSLAANASEVATQGGTVVQKVVSTMSSINESARKIADIIGVIDGIAFQTNILALNAAVEAA
RAGEQGRGFAVVAGEVRTLAQRSAAAAKEIKTLISDSVDKVENGNTLVAQAGQTMSDIVVAIRRVTDIMSEI
AAASAEQSTGIEEVNSAVSQMDDMTQQNAALVEEAAAAAEAMQEQAGLLNQSVAVFRLDTPPSVVQLASARP
SAPRPSAPAPLARSGMARASKARKEDGWEEF*
AnnotationID:407GeneID:398
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 08:08:35
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis transducer
Cell Localization:()
Synonyms:PA0176
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN55170.1|AE015654_7 (AE015654) methyl-accepting chemotaxis protein [Shewanella
           oneidensis MR-1]
          Length = 654

 Score =  580 bits (1495), Expect = e-164
 Identities = 311/524 (59%), Positives = 403/524 (76%), Gaps = 9/524 (1%)

>emb|CAD85774.1| (BX321862) probable chemotaxis transducer [Nitrosomonas europaea
           ATCC 19718]
          Length = 776

 Score =  495 bits (1274), Expect = e-139
 Identities = 289/553 (52%), Positives = 384/553 (69%), Gaps = 42/553 (7%)








 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  95.6% aligned
Score =  187 bits (475), Expect = 4e-48
Identities = 150/390 (38%), Positives = 223/390 (57%), Gaps = 25/390 (6%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer).
CD-Length = 262 residues, 100.0% aligned
Score =  185 bits (470), Expect = 2e-47
Identities = 108/262 (41%), Positives = 162/262 (61%), Gaps = 14/262 (5%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues,  99.6% aligned
Score =  189 bits (480), Expect = 1e-48
Identities = 129/250 (51%), Positives = 166/250 (66%), Gaps = 28/250 (11%)







   
Genomic Context:






   
Comment:


















    ReferenceID:799




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17941




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33543




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:398_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:398
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
664
                           PA0176_tr
                           translation of PA0176
                           679
                           99.55
                           99.85
                           0
                           3293.0
     

     
     
30489
                           gb|AAG03566.1|AE004455_7
                           (AE004455) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           679
                           99.55
                           99.85
                           0
                           3293.0
     

     
     
30491
                           gb|AAN55170.1|AE015654_7
                           (AE015654) methyl-accepting chemotaxis protein [Shewanella oneidensis MR-1]
                           706
                           48.30
                           64.73
                           79
                           1503.0
     

     
     
30497
                           gb|AAM36761.1|
                           (AE011824) chemotaxis protein [Xanthomonas axonopodis pv. citri str. 306]
                           714
                           42.01
                           58.26
                           63
                           1186.0
     

     
     
30510
                           gb|AAM36758.1|
                           (AE011824) chemotaxis protein [Xanthomonas axonopodis pv. citri str. 306]
                           751
                           40.87
                           54.99
                           129
                           1112.0
     

     






      

          
GC ORFID: 43400How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0176Glimmer Score: 

          
Start: 6001838Stop: 5999799

          
Length: 2040


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0176 translation of PA0176Homolog Bit Score 1273.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2547 (ORF: BLASTX 231.0), t_PA0176 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGTCTGTTCAATGCACATGCGGTGGCGCAGCAACGCGCCGACCGGATCGCCACGCTCCTCCAGTCGTTC 
GCCGACGGCCAGCTCGACACCGCCGTCGGCGAGGCCCCGGCGCCCGGCTACGAGCGTCTTTACGACAGCCTG 
CGGGCGCTACAGCGGCAACTGCGCGAACAACGCGCCGAACTCCAGCAGGTGGAAAGCCTGGAGGCGGGGCTG 
GCGGAGATGAGCCGCCAGCACGAAGCCGGCTGGATCGACCAGACGATTCCCGCCGAACGCCTAGAAGGCCGC 
GCGGCGCGCATCGCCAAGGGCGTCAACGAACTGGTGGCCGCGCACATCGCGGTGAAGATGAAGGTGGTCAGC 
GTGGTCACCGCCTACGGCCAGGGCAACTTCGAGCCGCTGATGGACCGCCTGCCGGGCAAGAAGGCGCAGATC 
ACCGAAGCCATCGACGGCGTTCGCGAGCGCCTGCGCGGGGCCGCCGAGGCGACCTCGGCGCAACTGGCCACG 
GCGGCCTACAACGCGCGGATCAAGAGCGCGCTGGACAACGTCTCGGCCAACGTGATGATCGCCGACAACGAC 
CTCAACATCATCTACATGAACCGCACCGTCAGCGAGATGCTCGGCCGCGCCGAAGCGGATATCCGCAAGCAA 
CTGCCGAACTTCGACGCCGGCCGCCTGTTGGGCGCCAACATCGACGTGTTCCACAAGAACCCGGCGCACCAG 
CGGCACCTGCTGGCCAACCTCACCGGCGTGCACAAGGCCGAGCTCAACCTCGGCGGCCGGCGCTTCTCCCTC 
GACGTGGTGCCAGTGTTCAACGACGCCAACGAACGCCTCGGCTCCGCCGTGCAATGGACCGACCGCACCGAG 
GAACACCGCGCCGAGCAGGAAGTCTCGCAACTGGTGCAGGCGGCGGCCGCCGGCGACTTCAGCAAGCGCGTC 
GAGGAGGCCGGCAAGGAAGGCTTCTTCCTCAGGCTGGCGAAGGACCTGAACAGCCTGGTGGATACCGCCGAC 
CGCGGCTTGCGCGACGTCTCGCGGATGCTCGGGGCGCTGGCCCAGGGCGACCTCACCCAGCGCATCGAGGCC 
GACTACCAGGGCACCTTCGGCCAGCTCAAGGACTTCTCCAACGAGACCGCGCTGAGCCTGTCGCGGATGCTC 
GGGCAGATTCGCGAGGCCGCCGACACCATCAACACCGCCGCCAGCGAGATCGCCAGCGGCAACGCCGAACTG 
TCGGCGCGCACCGAGCAGCAGGCGTCGAGCCTGGAGGAAACCGCCTCGAGCATGGAAGAACTGACCAGCACG 
GTGAAGCTCAACGCCGAGAATGCCCGCCAGGCCAACTCGCTGGCGGCCAATGCCTCGGAAGTGGCGACCCAG 
GGCGGCACCGTGGTGCAGAAGGTGGTCAGCACCATGTCCTCGATCAACGAGTCGGCGCGCAAGATCGCCGAC 
ATCATCGGGGTGATCGACGGCATCGCCTTCCAGACCAACATCCTCGCCCTCAACGCCGCGGTCGAGGCAGCC 
CGCGCCGGCGAGCAGGGCCGCGGCTTCGCGGTGGTCGCCGGGGAAGTGCGCACCCTCGCCCAGCGTTCCGCC 
GCCGCGGCCAAGGAGATCAAGACGCTGATCTCCGACTCGGTGGACAAGGTGGAGAACGGCAACACCCTGGTG 
GCCCAGGCCGGACAGACCATGAGCGACATCGTGGTAGCGATCCGCCGGGTCACCGACATCATGTCGGAGATC 
GCCGCCGCCTCCGCCGAGCAGAGCACCGGCATCGAAGAGGTGAACAGCGCGGTCTCGCAGATGGACGACATG 
ACCCAGCAGAACGCCGCGCTGGTGGAGGAAGCCGCGGCCGCCGCCGAGGCCATGCAGGAGCAGGCGGGCCTG 
CTCAACCAGTCGGTGGCGGTGTTCAGGCTGGACACTCCGCCGAGCGTGGTCCAGCTCGCCAGCGCGCGGCCG 
TCCGCGCCACGCCCCAGCGCGCCGGCGCCGCTGGCCCGCAGCGGCATGGCGCGGGCCAGCAAGGCGCGCAAG 
GAAGACGGCTGGGAAGAGTTCTGA