ViewGene
Locus Name:
GeneID:
Location:

GeneID:3979
TrivialName: PA14_64240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64240
PAO1 Ortholog Locus:PA4857
Sequence Length:594
Protein Length:197
Start: 5726098
Stop: 5726691
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08242.1|AE004899_3 (AE004899) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGCATTTGCTGTTCAGCGTCTACCTGAAGATGCTGGTGCTCTATAGCCCCTTCTTCGTGCTGTCCTGCTTC
ATCAGTCTCAGCCGCGGCTTCGGCCCGCGCGACCGCAAGCGCATGGCCTGGCGGGTGGCCCTGGCGGCGCTG
ATCGCCAGCGTCGCGCTGTACCTGTTCGGCCGCTACATCTTCATCCTCTTCGGTATCACCGCCGACGCCTTC
CGCATCGGCGCCGGCAGCGTGCTGTTCATCTCCGCGCTGGGCATGGCCCAGGGCCGCGCGGCGGTGCAGAGC
GACAACGTGCAGCAGGACGTGACCATCGTCCCGCTGACCATTCCTCTCACCGTCGGCCCCGGGACCATCGGC
GCGCTGCTGGTGATGGGCGTCGGCCAGGGCTGGGAGGCCAAGCTGATCTCCCTGGTGGCGATCTTCCTCGCC
TGCCTGACCCTCGGCACCACGCTCTATCTTTCCGACCGCATCGAACGCCTGCTTGGCGACCAGGGCCTGCAG
ATCGTCAGTCGCCTGATGGGTCTGTTCGTCTGCGCGCTGGCGGCGCAGATCATCGTCACCGGCCTGAAGGGT
TCGCTGTTCCCAGGCTGA
Translation:
MHLLFSVYLKMLVLYSPFFVLSCFISLSRGFGPRDRKRMAWRVALAALIASVALYLFGRYIFILFGITADAF
RIGAGSVLFISALGMAQGRAAVQSDNVQQDVTIVPLTIPLTVGPGTIGALLVMGVGQGWEAKLISLVAIFLA
CLTLGTTLYLSDRIERLLGDQGLQIVSRLMGLFVCALAAQIIVTGLKGSLFPG*
AnnotationID:3986GeneID:3979
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 09:09:36
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein, MarC family
Cell Localization:()
Synonyms:PA4857
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2095,pfam01914
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58298.1| (AE016873) membrane protein, MarC family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 198

 Score =  299 bits (766), Expect = 6e-81
 Identities = 151/197 (76%), Positives = 178/197 (90%), Gaps = 1/197 (0%)

>gb|AAN70394.1|AE016681_3 (AE016792) membrane protein, MarC family [Pseudomonas putida
           KT2440]
          Length = 198

 Score =  298 bits (763), Expect = 1e-80
 Identities = 155/197 (78%), Positives = 174/197 (88%), Gaps = 1/197 (0%)








 
Structural Features:
COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion]
CD-Length = 203 residues,  96.1% aligned
Score =  130 bits (329), Expect = 1e-31
Identities = 76/196 (38%), Positives = 108/196 (55%), Gaps = 5/196 (2%)

pfam01914, MarC, MarC family integral membrane protein. Integral membrane protein 
family that includes the antibiotic resistance protein MarC.
CD-Length = 203 residues, 100.0% aligned
Score =  113 bits (285), Expect = 1e-26
Identities = 70/203 (34%), Positives = 109/203 (53%), Gaps = 9/203 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7960




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25103




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35179




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3979_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3979
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6217
                           PA4857_tr
                           translation of PA4857
                           197
                           99.99
                           99.99
                           0
                           976.0
     

     
     
172158
                           gb|AAG08242.1|AE004899_3
                           (AE004899) hypothetical protein PA4857 [Pseudomonas aeruginosa PAO1]
                           197
                           99.99
                           99.99
                           0
                           976.0
     

     
     
172160
                           gb|AAN70394.1|AE016681_3
                           (AE016792) membrane protein, MarC family [Pseudomonas putida KT2440]
                           199
                           77.88
                           87.43
                           3
                           765.0
     

     
     
172159
                           gb|AAO58298.1|
                           (AE016873) membrane protein, MarC family [Pseudomonas syringae pv. tomato str. DC3000]
                           199
                           75.87
                           89.44
                           3
                           768.0
     

     
     
172161
                           gb|AAR34127.1|
                           (AE017209) conserved hypothetical protein TIGR00427 [Geobacter sulfurreducens PCA]
                           203
                           45.81
                           66.50
                           7
                           447.0
     

     






      

          
GC ORFID: 46981How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4857Glimmer Score: 

          
Start: 4989778Stop: 4990371

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4857 translation of PA4857Homolog Bit Score 380.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5779 (ORF: BLASTX 300.0), t_PA4857 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATTTGCTGTTCAGCGTCTACCTGAAGATGCTGGTGCTCTATAGCCCCTTCTTCGTGCTGTCCTGCTTC 
ATCAGTCTCAGCCGCGGCTTCGGCCCGCGCGACCGCAAGCGCATGGCCTGGCGGGTGGCCCTGGCGGCGCTG 
ATCGCCAGCGTCGCGCTGTACCTGTTCGGCCGCTACATCTTCATCCTCTTCGGTATCACCGCCGACGCCTTC 
CGCATCGGCGCCGGCAGCGTGCTGTTCATCTCCGCGCTGGGCATGGCCCAGGGCCGCGCGGCGGTGCAGAGC 
GACAACGTGCAGCAGGACGTGACCATCGTCCCGCTGACCATTCCTCTCACCGTCGGCCCCGGGACCATCGGC 
GCGCTGCTGGTGATGGGCGTCGGCCAGGGCTGGGAGGCCAAGCTGATCTCCCTGGTGGCGATCTTCCTCGCC 
TGCCTGACCCTCGGCACCACGCTCTATCTTTCCGACCGCATCGAACGCCTGCTTGGCGACCAGGGCCTGCAG 
ATCGTCAGTCGCCTGATGGGTCTGTTCGTCTGCGCGCTGGCGGCGCAGATCATCGTCACCGGCCTGAAGGGT 
TCGCTGTTCCCAGGCTGA