ViewGene
Locus Name:
GeneID:
Location:

GeneID:3978
TrivialName: PA14_57910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57910
PAO1 Ortholog Locus:PA4459
Sequence Length:573
Protein Length:190
Start: 5154424
Stop: 5154996
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07847.1|AE004860_3 (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/190 (100%), Positives = 190/190 (100%)
Sequence:
ATGCCGAAGACACTACGCCAGAAACTGCTGCTCGCCCTGATCGCCCTGTTGCTGATCGTCGCGGGCTACTAC
TGGAACGTCGGGCTCGAGCTGTTCAACGAACAGCCGACCCGCCCCGGCCAGGACAACACCATCGACTACTAT
GCCGAGAATGCCCATAGCCTCCAGTACCAGGAGGACGGCAGCCTCGACTACGAGATGACCGCGGTGAAGCTG
GAGCACCAGAAAGCCACGGACATCACTTTCGTCACCACCCCCGACCTGCTGCTCTTCCGTGGCAACGTGCAA
CCCTGGCACATCCAGAGCGCCCGCGCCGAAGTCGGACCGAAAGGCAAGGAGGTCGAACTCATCGACGACGTG
CGCGTCGCACGTACCGATGCCAAGGGCCAACCAAGCATCCTGACCACCACTCGGCTGACCGTATTCCCCGAC
AAGAATTATGCACAGACCGAGCAAGCCGTTAAAATCGACGCGGCCAATGGAGTGACGACGGCTGTTGGAATG
AAAGCGTATCTGAAAGACAGCCGGATGCACCTGCTGTCCAACGTAAGAGGTCAGCATGAGGTTCGTTAA
Translation:
MPKTLRQKLLLALIALLLIVAGYYWNVGLELFNEQPTRPGQDNTIDYYAENAHSLQYQEDGSLDYEMTAVKL
EHQKATDITFVTTPDLLLFRGNVQPWHIQSARAEVGPKGKEVELIDDVRVARTDAKGQPSILTTTRLTVFPD
KNYAQTEQAVKIDAANGVTTAVGMKAYLKDSRMHLLSNVRGQHEVR*
AnnotationID:3985GeneID:3978
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 06:06:46
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4459
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7958




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25101




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31498




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3978_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3978
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6216
                           PA4459_tr
                           translation of PA4459
                           190
                           99.99
                           99.99
                           0
                           976.0
     

     
     
172154
                           gb|AAG07847.1|AE004860_3
                           (AE004860) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           190
                           99.99
                           99.99
                           0
                           976.0
     

     
     
172155
                           emb|CAD43109.1|
                           (AJ496594) hypothetical protein [Pseudomonas stutzeri]
                           191
                           60.20
                           75.39
                           2
                           578.0
     

     
     
172156
                           gb|AAN66580.1|AE016286_4
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           191
                           58.63
                           72.25
                           2
                           569.0
     

     
     
172157
                           gb|AAO57899.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           191
                           56.02
                           71.20
                           2
                           546.0
     

     






      

          
GC ORFID: 46980How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4459Glimmer Score: 

          
Start: 4418103Stop: 4418675

          
Length: 573


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4459 translation of PA4459Homolog Bit Score 380.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5544 (ORF: BLASTX 219.0), t_PA4459 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGAAGACACTACGCCAGAAACTGCTGCTCGCCCTGATCGCCCTGTTGCTGATCGTCGCGGGCTACTAC 
TGGAACGTCGGGCTCGAGCTGTTCAACGAACAGCCGACCCGCCCCGGCCAGGACAACACCATCGACTACTAT 
GCCGAGAATGCCCATAGCCTCCAGTACCAGGAGGACGGCAGCCTCGACTACGAGATGACCGCGGTGAAGCTG 
GAGCACCAGAAAGCCACGGACATCACTTTCGTCACCACCCCCGACCTGCTGCTCTTCCGTGGCAACGTGCAA 
CCCTGGCACATCCAGAGCGCCCGCGCCGAAGTCGGACCGAAAGGCAAGGAGGTCGAACTCATCGACGACGTG 
CGCGTCGCACGTACCGATGCCAAGGGCCAACCAAGCATCCTGACCACCACTCGGCTGACCGTATTCCCCGAC 
AAGAATTATGCACAGACCGAGCAAGCCGTTAAAATCGACGCGGCCAATGGAGTGACGACGGCTGTTGGAATG 
AAAGCGTATCTGAAAGACAGCCGGATGCACCTGCTGTCCAACGTAAGAGGTCAGCATGAGGTTCGTTAA