ViewGene
Locus Name:
GeneID:
Location:

GeneID:3977
TrivialName: PA14_10920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10920
PAO1 Ortholog Locus:PA4095
Sequence Length:534
Protein Length:177
Start: 945633
Stop: 945100
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07482.1|AE004825_11 (AE004825) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 175/177 (98%), Positives = 175/177 (98%)
Sequence:
ATGCCCGAACTCGCCACCCGTGAATTCTGGAAAGACCTGCAACCGATTCCCGACTGCTTCAAGCCGGACGCC
AAGCCCGAGGTCTACCTGCACAACGCGCCGACCGAAGACGAGCGCCTCTACGTGCCCTTCACCGAGACCGTG
AAGTCGCGTCCGCTGTGGATCTCGCCAAGCGAAAACCGCTGGTGCGACATCCTGATGGCGACGAGCGCCGGC
CTGGTCAACCGCCACTACCACCCGCACGAGGTGTTCGCCTACACCATCAGCGGCAAGTGGGGCTACCTGGAG
CACGATTGGACCGCCACCGCCGGCGACTTCGTCTACGAGACGCCCGGCGAGGGCCACACCCTGGTGGCCTAC
GAGCACGAGCAGCCGATGCGTGCGTTCTTCATCGTCAAGGGGCCGCTGGTCTGGCTCGACGAGAAGGGCAAC
GCGGACGGCATCTTCGACGTCCACGACTACATCGCGATGTGCCGCGCGCACTACGACAAGATCGGCGTCGGC
GCCGCCTACATCGACTCCCTGTTCCGCTGA
Translation:
MPELATREFWKDLQPIPDCFKPDAKPEVYLHNAPTEDERLYVPFTETVKSRPLWISPSENRWCDILMATSAG
LVNRHYHPHEVFAYTISGKWGYLEHDWTATAGDFVYETPGEGHTLVAYEHEQPMRAFFIVKGPLVWLDEKGN
ADGIFDVHDYIAMCRAHYDKIGVGAAYIDSLFR*
AnnotationID:3984GeneID:3977
AnnotatorUID: diggins
Modification Date/Time: 2005-06-07 13:01:34
Gene Name:
Confidence Code:3
GeneProduct:putative 2,4'-dihydroxyacetophenone dioxygenase
Cell Localization:()
Synonyms:dad
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:1.13.11.41
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56540.1| (AE016866) 2,4'-dihydroxyacetophenone dioxygenase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 177

 Score =  324 bits (830), Expect = 2e-88
 Identities = 143/177 (80%), Positives = 160/177 (90%)

>emb|CAB53781.1| (AJ133820) 2,4'-dihydroxyacetophenone dioxygenase [Alcaligenes sp.]
          Length = 176

 Score =  302 bits (774), Expect = 5e-82
 Identities = 134/173 (77%), Positives = 150/173 (86%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7956




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25099




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3977
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6215
                           PA4095_tr
                           translation of PA4095
                           177
                           98.87
                           98.87
                           0
                           977.0
     

     
     
172151
                           gb|AAG07482.1|AE004825_11
                           (AE004825) hypothetical protein PA4095 [Pseudomonas aeruginosa PAO1]
                           177
                           98.87
                           98.87
                           0
                           977.0
     

     
     
172152
                           gb|AAO56540.1|
                           (AE016866) 2,4'-dihydroxyacetophenone dioxygenase [Pseudomonas syringae pv. tomato str. DC3000]
                           177
                           80.79
                           90.39
                           0
                           830.0
     

     
     
172153
                           emb|CAB53781.1|
                           (AJ133820) 2,4'-dihydroxyacetophenone dioxygenase [Alcaligenes sp.]
                           177
                           75.70
                           84.74
                           1
                           768.0
     

     






      

          
GC ORFID: 46979How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4095Glimmer Score: 

          
Start: 4008304Stop: 4008837

          
Length: 534


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4095 translation of PA4095Homolog Bit Score 380.0

          
Other Homologs:  t_PA4095 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGAACTCGCCACCCGTGAATTCTGGAAAGACCTGCAACCGATTCCCGACTGCTTCAAGCCGGACGCC 
AAGCCCGAGGTCTACCTGCACAACGCGCCGACCGAAGACGAGCGCCTCTACGTGCCCTTCACCGAGACCGTG 
AAGTCGCGTCCGCTGTGGATCTCGCCAAGCGAAAACCGCTGGTGCGACATCCTGATGGCGACGAGCGCCGGC 
CTGGTCAACCGCCACTACCACCCGCACGAGGTGTTCGCCTACACCATCAGCGGCAAGTGGGGCTACCTGGAG 
CACGATTGGACCGCCACCGCCGGCGACTTCGTCTACGAGACGCCCGGCGAGGGCCACACCCTGGTGGCCTAC 
GAGCACGAGCAGCCGATGCGTGCGTTCTTCATCGTCAAGGGGCCGCTGGTCTGGCTCGACGAGAAGGGCAAC 
GCGGACGGCATCTTCGACGTCCACGACTACATCGCGATGTGCCGCGCGCACTACGACAAGATCGGCGTCGGC 
GCCGCCTACATCGACTCCCTGTTCCGCTGA