ViewGene
Locus Name:
GeneID:
Location:

GeneID:3976
TrivialName: PA14_15710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15710
PAO1 Ortholog Locus:PA3765
Sequence Length:585
Protein Length:194
Start: 1336210
Stop: 1336794
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07152.1|AE004795_4 (AE004795) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 191/194 (98%), Positives = 192/194 (98%)
Sequence:
ATGGCCAATGATCCATACATCCGATCCTTCACCTGCTTCGACGGCACGCGCCGGCTGCTGACGGCGGCGCTG
CCGGAGGTTGCGCTGGCCTTGAAGCAAGCGGTCGCCGGCGGTGCTGCCGGGCCGCTGCTGGTGTTCGACAAT
GCCACTGGGCGCTCCGTCGATCTCGATATCCGCGGTTCCCGCGAGGACCTGCTGGCGCGCCTGGTCGGCGCA
GGCGAGCGGCAACCGGCGGAGGAGGCCGCGCCGCGCGGGCGCGGGCGGCCGAAGCTGGGCGTGGTGGCGCGC
GAGGTGACCTTGCTGCCGCGCCACTGGGAATGGCTCGCCGCGCAGCCCGGGGGCGCCTCGGTGGCGCTGCGC
AAGCTGGTCGAGGAGGCGCGCCGCAGCCAGTCCGGGCGTGCGCGGCAGGCGCAAGAGCGCGCCTACCATTTC
ATGAATGCGATGGCCGGCGACCTGCCGGGCTTCGAGGAGGCGACGCGGGCGCTGTTCGCCGGGGATCGCGAG
GGCTTCGCCGAGCGGATCGCCGGCTGGCCGACCGATGTGCGCGAGCACGCCGCCTGGCTGGCAAGCGACGGA
GAATCCTGA
Translation:
MANDPYIRSFTCFDGTRRLLTAALPEVALALKQAVAGGAAGPLLVFDNATGRSVDLDIRGSREDLLARLVGA
GERQPAEEAAPRGRGRPKLGVVAREVTLLPRHWEWLAAQPGGASVALRKLVEEARRSQSGRARQAQERAYHF
MNAMAGDLPGFEEATRALFAGDREGFAERIAGWPTDVREHAAWLASDGES*
AnnotationID:3983GeneID:3976
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 12:12:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3765
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7954




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25097




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31792




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3976_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3976
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6214
                           PA3765_tr
                           translation of PA3765
                           194
                           98.45
                           98.96
                           0
                           976.0
     

     
     
172143
                           gb|AAG07152.1|AE004795_4
                           (AE004795) hypothetical protein PA3765 [Pseudomonas aeruginosa PAO1]
                           194
                           98.45
                           98.96
                           0
                           976.0
     

     
     
172144
                           dbj|BAC45851.1|
                           (AP005937) blr0586 [Bradyrhizobium japonicum USDA 110]
                           201
                           58.20
                           70.14
                           10
                           537.0
     

     
     
172149
                           gb|AAK23999.1|
                           (AE005875) conserved hypothetical protein [Caulobacter crescentus CB15]
                           202
                           50.99
                           59.40
                           24
                           448.0
     

     
     
172145
                           emb|CAE32821.1|
                           (BX640444) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           205
                           50.73
                           65.36
                           13
                           494.0
     

     






      

          
GC ORFID: 46978How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3765Glimmer Score: 

          
Start: 3617727Stop: 3617143

          
Length: 585


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3765 translation of PA3765Homolog Bit Score 380.0

          
Other Homologs:  t_PA3765 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAATGATCCATACATCCGATCCTTCACCTGCTTCGACGGCACGCGCCGGCTGCTGACGGCGGCGCTG 
CCGGAGGTTGCGCTGGCCTTGAAGCAAGCGGTCGCCGGCGGTGCTGCCGGGCCGCTGCTGGTGTTCGACAAT 
GCCACTGGGCGCTCCGTCGATCTCGATATCCGCGGTTCCCGCGAGGACCTGCTGGCGCGCCTGGTCGGCGCA 
GGCGAGCGGCAACCGGCGGAGGAGGCCGCGCCGCGCGGGCGCGGGCGGCCGAAGCTGGGCGTGGTGGCGCGC 
GAGGTGACCTTGCTGCCGCGCCACTGGGAATGGCTCGCCGCGCAGCCCGGGGGCGCCTCGGTGGCGCTGCGC 
AAGCTGGTCGAGGAGGCGCGCCGCAGCCAGTCCGGGCGTGCGCGGCAGGCGCAAGAGCGCGCCTACCATTTC 
ATGAATGCGATGGCCGGCGACCTGCCGGGCTTCGAGGAGGCGACGCGGGCGCTGTTCGCCGGGGATCGCGAG 
GGCTTCGCCGAGCGGATCGCCGGCTGGCCGACCGATGTGCGCGAGCACGCCGCCTGGCTGGCAAGCGACGGA 
GAATCCTGA