ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3975

TrivialName: PA14_54430

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_54430

PAO1 Ortholog Locus: PA0762

Sequence Length: 582

Protein Length: 193

Start: 4826653

Stop: 4826072

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04151.1|AE004511_4 (AE004511) sigma factor AlgU [Pseudomonas aeruginosa PAO1] Identities = 193/193 (100%), Positives = 193/193 (100%)

Sequence:

ATGCTAACCCAGGAACAGGATCAGCAACTGGTTGAACGGGTACAGCGCGGAGACAAGCGGGCTTTCGATCTG
CTGGTACTGAAATACCAGCACAAGATACTGGGATTGATCGTGCGGTTCGTGCACGACGCCCAGGAAGCCCAG
GACGTAGCGCAGGAAGCCTTCATCAAGGCATACCGCGCGCTCGGCAATTTCCGCGGCGATAGTGCTTTTTAT
ACCTGGCTGTATCGGATCGCCATCAACACCGCGAAGAACCATCTGGTCGCTCGCGGGCGTCGGCCACCGGAC
AGCGATGTGACCGCAGAGGATGCGGAGTTCTTCGAGGGCGACCACGCCCTGAAGGACATCGAATCGCCGGAA
CGGGCGATGTTGCGGGATGAGATCGAGGCCACCGTGCACCAGACCATCCAGCAGTTGCCCGAGGATTTGCGC
ACGGCCCTGACCCTGCGCGAGTTCGAAGGTTTGAGTTACGAAGATATCGCCACCGTGATGCAGTGTCCGGTG
GGGACGGTGCGGTCGCGGATCTTCCGCGCTCGTGAAGCAATCGACAAAGCTCTGCAGCCTTTGTTGCGAGAA
GCCTGA

Translation:

MLTQEQDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDAQEAQDVAQEAFIKAYRALGNFRGDSAFY
TWLYRIAINTAKNHLVARGRRPPDSDVTAEDAEFFEGDHALKDIESPERAMLRDEIEATVHQTIQQLPEDLR
TALTLREFEGLSYEDIATVMQCPVGTVRSRIFRAREAIDKALQPLLREA*

AnnotationID:3982 GeneID:3975

AnnotatorUID: danlee

Modification Date/Time: 2004-04-14 13:01:43

Gene Name: algU

Confidence Code: 1

GeneProduct: sigma factor AlgU

Cell Localization: ()

Synonyms: PA0762, algT

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1595

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].
       CD-Length = 182 residues,  99.5% aligned
       Score =  129 bits (324), Expect = 6e-31

Genomic Context:

Comment:

ReferenceID:7952

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25095

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3975

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6213 PA0762_tr translation of PA0762 193 99.99 99.99 0 977.0

172093 gb|AAA64439.1| (L36379) alternative sigma factor [Pseudomonas aeruginosa] 193 99.99 99.99 0 977.0

172092 gb|AAA87628.1| (L14760) algU gene product [Pseudomonas aeruginosa] 193 99.99 99.99 0 977.0

172091 gb|AAA87631.1| (L14761) algU gene product [Pseudomonas aeruginosa] 193 99.99 99.99 0 977.0

172090 gb|AAC43714.1| (U49151) sigma factor [Pseudomonas aeruginosa] 193 99.99 99.99 0 977.0

GC ORFID: `46977`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0762`	Glimmer Score:
Start: `127254`	Stop: `127835`
Length: `582`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0762 translation of PA0762`	Homolog Bit Score `380.0`
Other Homologs: `psyr_15may02_Scaffold16_revised_gene2704 (ORF: BLASTX 350.0), t_PA0762 (ORF: GLIMMER)`
GC ORF Sequence
ATGCTAACCCAGGAACAGGATCAGCAACTGGTTGAACGGGTACAGCGCGGAGACAAGCGGGCTTTCGATCTG CTGGTACTGAAATACCAGCACAAGATACTGGGATTGATCGTGCGGTTCGTGCACGACGCCCAGGAAGCCCAG GACGTAGCGCAGGAAGCCTTCATCAAGGCATACCGCGCGCTCGGCAATTTCCGCGGCGATAGTGCTTTTTAT ACCTGGCTGTATCGGATCGCCATCAACACCGCGAAGAACCATCTGGTCGCTCGCGGGCGTCGGCCACCGGAC AGCGATGTGACCGCAGAGGATGCGGAGTTCTTCGAGGGCGACCACGCCCTGAAGGACATCGAATCGCCGGAA CGGGCGATGTTGCGGGATGAGATCGAGGCCACCGTGCACCAGACCATCCAGCAGTTGCCCGAGGATTTGCGC ACGGCCCTGACCCTGCGCGAGTTCGAAGGTTTGAGTTACGAAGATATCGCCACCGTGATGCAGTGTCCGGTG GGGACGGTGCGGTCGCGGATCTTCCGCGCTCGTGAAGCAATCGACAAAGCTCTGCAGCCTTTGTTGCGAGAA GCCTGA