ViewGene
Locus Name:
GeneID:
Location:

GeneID:3973
TrivialName: PA14_67650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67650
PAO1 Ortholog Locus:PA5123
Sequence Length:573
Protein Length:190
Start: 6043708
Stop: 6044280
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08508.1|AE004925_6 (AE004925) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 187/190 (98%), Positives = 189/190 (99%)
Sequence:
ATGATCCCGCGCATTCTCGGCGCCCTCCTGCTGTGCCTGGCCTGCGCCGCGCAAGCGGGGGTCTACACCTAC
ATCGACGCCGAGGGCAACCGCGTCTACACCGACCAGCCCCCCAGCGGGCGCAAGGCCCAACGCGTCGAACTG
GCGCCGGGCAACAGCGTGGCGCCGCCGGGCATACGCTATCGTCCGCCCGCCGCGCCGCTGGAGGTGAAGCCG
CCGGCCTACCAGCTACTGCGCATCCTCTTCCCCGAACCGGACGCAACCCTGCGCGCCAACAGCGGCGACGTC
ATCGTCACCGTCACCAGCGAGCCGGCGCTGCTGCCCGGCCATCGCTATCGCCTGCTGCTCGACGGCAAGCCT
GCCGGAGCGCCGGGACGCAGCCCGGTATTCCCGTTGAAGAACCTCGATCGCGGCACCCACCAGGTCGCAGTG
GAAATCATCGATGGCGACGGCATGACCGTCGAAAGCACCCCGAGCCAGCCCTTCCACCTGCATCGAGTGAGC
ATCGCCGGCCAACCCCTGCCGGAGGTCGATACGCCGCTGGTCAGCGCGGTACAGCCGAGCGAGCGCTAG
Translation:
MIPRILGALLLCLACAAQAGVYTYIDAEGNRVYTDQPPSGRKAQRVELAPGNSVAPPGIRYRPPAAPLEVKP
PAYQLLRILFPEPDATLRANSGDVIVTVTSEPALLPGHRYRLLLDGKPAGAPGRSPVFPLKNLDRGTHQVAV
EIIDGDGMTVESTPSQPFHLHRVSIAGQPLPEVDTPLVSAVQPSER*
AnnotationID:3980GeneID:3973
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 09:09:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5123
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7948




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25091




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3973
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6212
                           PA5123_tr
                           translation of PA5123
                           190
                           98.42
                           99.47
                           0
                           979.0
     

     
     
172087
                           gb|AAG08508.1|AE004925_6
                           (AE004925) hypothetical protein PA5123 [Pseudomonas aeruginosa PAO1]
                           190
                           98.42
                           99.47
                           0
                           979.0
     

     
     
172088
                           gb|AAO53899.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           217
                           48.84
                           58.06
                           34
                           466.0
     

     






      

          
GC ORFID: 46975How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5123Glimmer Score: 

          
Start: 5307393Stop: 5307965

          
Length: 573


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5123 translation of PA5123Homolog Bit Score 381.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6892 (ORF: BLASTX 179.0), t_PA5123 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCCGCGCATTCTCGGCGCCCTCCTGCTGTGCCTGGCCTGCGCCGCGCAAGCGGGGGTCTACACCTAC 
ATCGACGCCGAGGGCAACCGCGTCTACACCGACCAGCCCCCCAGCGGGCGCAAGGCCCAACGCGTCGAACTG 
GCGCCGGGCAACAGCGTGGCGCCGCCGGGCATACGCTATCGTCCGCCCGCCGCGCCGCTGGAGGTGAAGCCG 
CCGGCCTACCAGCTACTGCGCATCCTCTTCCCCGAACCGGACGCAACCCTGCGCGCCAACAGCGGCGACGTC 
ATCGTCACCGTCACCAGCGAGCCGGCGCTGCTGCCCGGCCATCGCTATCGCCTGCTGCTCGACGGCAAGCCT 
GCCGGAGCGCCGGGACGCAGCCCGGTATTCCCGTTGAAGAACCTCGATCGCGGCACCCACCAGGTCGCAGTG 
GAAATCATCGATGGCGACGGCATGACCGTCGAAAGCACCCCGAGCCAGCCCTTCCACCTGCATCGAGTGAGC 
ATCGCCGGCCAACCCCTGCCGGAGGTCGATACGCCGCTGGTCAGCGCGGTACAGCCGAGCGAGCGCTAG